Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g00788 ATGATTCCATATCTCAATCTGCAGGGGACTCCAGTGAATATTATTGTGGGTTCTCATGTCTGGATTGAGGACCCAGATGTATCTTGGATTGATGGACAGGTACTAAAAATCAGTGGAAAGGAAGCTGATATTGAAACTACCAATGGAAAACAGGTTGTTGCAAATTTATCAAAACTATATCCTAAGGACATGGAAGCTCCTCCTGGTGGAGTGGACGATATGACTAAACTGTCCTATTTGCACGAGCCTGGAGTCCTGCAGAACTTAAAAGCTAGATATGAATTGAATGAAATATATACTTATACTGGAAATATTCTGATAGCAATTAATCCATTCCAAAGACTACCTCATATTTATGGTGCACACATGATGCAACAATACAAGGGAGCACCGTTTGGAGAATTAAGCCCTCATGTATTTGCAGTTGCTGATGTTGCATATAGGGCAATGATTAACGAAGGAAAAAGCAATTCAATTCTAGTCAGTGGGGAAAGTGGAGCTGGTAAAACTGAAACTACAAAAATGCTTATGCAATACCTTGCCTTCTTAGGTGGTAGGGCTGGTACTGAAGGACGAACGGTTGAACAACAAGTCCTTGAATCAAATCCAGTTCTGGAAGCATTTGGGAATGCTAAAACTGTCAGAAATAACAATTCTAGTCGTTTTGGTAAATTTGTTGAGATCCAATTTGATAAAAATGGAAGAATATCAGGAGCAGCCATCCGAACGTACCTTCTAGAGAGATCTCGGGTTTGCCAAATTAACGATCCTGAAAGGAACTACCATTGCTTTTATCTTCTTTGTGCTGCACCACAGGAGGAACTTGAGAAATACAAATTAGGAAGTCCTAAATCTTTTCACTACCTTAACCAGTCAAAATGCTTCGAACTGGCTGATATAAGTGATGCTCGTGAATATCTTGCCACCCGGAGAGCTATGGATATTGTTGGAATAAGTCAAAAAGATCAGGAAGCCATTTTCAGAGTTGTTGCTGCAATTCTTCATATTGGTAATATTGATTTTACCAAAGGAAAGGAAATTGACTCATCAGTTCCAAAAGATGACAAATCTAAATTCCACCTGAAAACAACTGCTGACCTTCTCATGTGTGATGCTGATGCCTTAGAAGACGCATTATGTAAGCGTGTCATGATCACCCCAGAAGAAGTTATAAAACGGAGCCTTGACCCACAAAGTGCAATGGTCAGTAGAGATGGTTTGGCAAAAACAATATATTCTCGGTTATTTGACTGGTTGGTGGACAAGATTAACAATTCAATTGGACAAGATCCCAATTCTAAATCTTTGATTGGGGTCCTTGATATCTATGGTTTTGAAAGCTTTAAATCTAACAGTTTCGAGCAATTTTGCATTAATTTTACAAATGAGAAGTTGCAGCAACATTTCAATCAGGCAAACACGTGTTTAAAATGGAACAAGAAGAATACACAAAGGAGCAGATCAATTGGAGTTACATTGAATTTGTTGACAACCAAGATGTTTTGGACCTTATTGAGAAGGTTTTCTTCCTCTCCTTTTGTTCCCTCACTTTCTTCTATGCATTGGAAACCTGGAGGAATCATTGCTCTCCTTGATGAAGCTTGCATGTTTCCTAAGTCAACTCATGAAACATTTGCAAACAAGCTTTATCAAACATTTAAGAATCACAAGCGCTTTATTAAGCCAAAATTGTCTCGAACAGATTTCACAATTGCTCATTATGCTGGGGAGGTATTGTACCAGTCTGACCAATTCTTAGATAAAAACAAGGACTATGTGGTTCCTGAACATCAAGATTTATTGAGTGCTTCCAAATGTTCTTTTGTATCCGGTCTTTTCCCACCACTTCCAGAAGAGTCATCAAAATCTTCCAAATTTTCTTCAATTGGTTCTCGTTTTAAGCTACAACTACAAAGCTTAATGGAGACATTAAATTCTACAGAACCCCATTACATTAGATGTGTGAAACCTAACAATCTCCTCAAGCCTGCAATTTTTGAGAATGTCAATATTATGCAACAACTTCGCTGTGGTGGTGTTTTGGAGGCAATCAGGATCAGTTGTGCTGGTTATCCTACTCGCCGAGCTTTCTTTGAATTTATAAACAGATTTGGCCTGCTTGCTCCAGAGGTCATGGAAGCAAACTTTGATGAAAAGACTGGTTGCCAAAAGGTTCTGGAAAAGATGGGACTTAGTGGATATCAGATTGGAAAAACAAAGGTATTCTTGAGAGCAGGTCAAATGGCTGAACTAGATGCACAGAGAGCTCAAGTACTTAGTAATGCAGCAAAAATTATCCAACGGCGTGTACGAACTCATCAAGCTCGTAAACATTATCTTGCTTTGCGAAAGAAGAGCATATATGTTCAGTCTCGGTGGAGAGGAAGACTTGCATGCAAACTCTATGAGCACCTGAGAAGGGAGGCTGCTGCTAAGAAAATTCAAAAGAACGTACGCAGATATGAAGCTAGGAAAGCCTATAAAGAACTTCATGTGGCAGTACTTACCCTGCAAACAGCTATAAGGGCTGTTTCTGCTCGCAAGAAATTCAGATTTAGAAAGCAGACTAAAGCTTCCATCATTATTCAGGCTCGGTGGCGGTGCCACAAAGCTGCCTTGTATCATAAGAGGCTAAAGAAAGGTGCACTAGTTACGCAATGCAAATGGAGGGGGCGCATAGCCAGGAAAGAACTTAGGAAATTGAAAATGGCTGCAAGAGAAACTGGTGCTCTTCAAGAAGCAAAGGATAAACTTGAAAAGCGAGTGGAGGAACTCACGTGGCGTCTCCAACTAGAAAAAGGTTTAAGGACCAATCTTGAAGAATCCAAAGCACAGGAGATAGCAAAACTGCAGACTTCATTGCAGGAGATGCAGAACAAATTTGATGAAAGTAATGCTATGCTTGTCAAAGAGCGAGAGAATGTGAAGAAAGTTGTTGAAGAAGCACCTCCTGTCATCAAAGAAACAAAGGTTATTGTTGAAGATACACAGAAGATTGAGTCACTGACAGCAGAAGTTGAGAACCTAAAGACCTCACTTGAGTCAGAGAAACAGAAAGCTGATGACTTTGAAAGAAGATACAAAGAAGCCCAAGTTTGTAGTGAAGAAAGAGGTAAAAAACTAGAAGACACGGAGAAGAAAGCTCGTCAACTTCAAGAATCATTGACTAGGCTAGAAGAGAAGATTACTAATTTAGAATCCGAGAATCAGGTTCTACGTCAACAAGCTGTGTCAATGGCACCTAATAAGTTCCTTTCAGGACGTTCAAGATCAATTATCCAGAGAACTGAAAGTGGCCATATTGTACCAGAAGCAAAGACACCTATGTCTAATCAAGAAATGCATAGCACATCAATGCACCGAAGGGAGCCCTCTGACGGCTTGGATGATAAACCACAGAAGTCACTAAATGAGAAACAACAGGAGAATCAAGAGTTACTCATTAGATGCATTGCACAACATCTAGGCTTTGCTGGGAACAGACCAATTGCTGCCTGCATCATATACAAATGCCTCTTGCACTGGCGATCATTTGAAGTTGAGCGTACTAGTGTTTTTGATCGTATCATCCAAACTATTGGCCATGCAATTGAGACCCAGGATAACAATGATGTCTTGGCTTATTGGTTATCCAATGCCTCTACACTTCTCTTGTTACTCCAGCGCACACTCAAGGCTAGTGGTGCTGCTGGAATGGCTCCCCAACGCCGTCGTTCCTCATCTGCAACCCTGTTTGGGAGGATGACTCAAAGTTTCCGTGGAAGTCCAGCTGGAGTCAATCTTTCCCTAATCAATGGTAGCACAAGCAGAGGAGTAGATACATTAAGACAAGTTGAAGCCAAGTACCCAGCTCTGCTTTTCAAACAACAGCTTACAGCATATGTGGAAAAGATATATGGAATGATTCGTGATAATTTGAAGAAAGAAATTTCTCCCTTGCTTGGATTATGCATCCAGGCACCAAGAACATCCAGAGCAAGCCTTGTTAAGGGAACATCACGTTCTGTTAACACAGAAGCCCAGCGTGCTTTAATTGCTCATTGGCAGGGGATAGTGAAGAGCCTAGGGAACTTTCTAAATACTTTGAAAGCGAATCATGTTCCTCCATTTTTAGTTCGTAAGGTGTTCACACAAATTTTTTCTTTCATCAATGTACAATTATTCAATAGTCTTCTTCTAAGACGGGAGTGCTGCTCATTTAGTAACGGAGAATACGTGAAAGCTGGTTTGGCTGAATTGGAGCATTGGTGTTATAAGGCAACCGATGAGTATGCAGGTTCAGCCTGGGATGAGCTAAAACATATTAGACAAGCTATTGGATTTCTGGTCATACATCAGAAACCAAAGAAAACATTGGATGAAATAAGCCATGACCTATGCCCAGTCCTTAGTATACAGCAGCTATATCGGATAAGCACCATGTATTGGGATGACAAATATGGAACGCATAGTGTGTCCTCCGATGTCATATCCAATATGAGAGTATTGATGACTGAAGATTCAAATAATGCAGTTAGTAATTCATTCCTGTTGGATGATGATTCAAGCATTCCGTTTTCTGTTGATGACATATCGAAGTCAATGGAACAGATAGATATCGCAGATATAGAGCCCCCGCCACTAATTCGTGAAAACTCTGGCTTTAGCTTTTTGTTGCCGCGCCCAGATTGACAGCTTTTGGTGTAGATCTGATCCACCGGTATTCTTACTTCCATGGAGTTACCAAGTCACATCAGTTAAATGTTATCATGGAGTGCTTGAATTGTTGACTTTGGCTGTGCCAGAAAAAGTCATTGTATTAAACATACCAAAATTTACATCTTAGTGATGGATGACGAAAGGTAGATCATCACGTGGTGCAAGTAGATTCTTGGGCTCAGAGAGAGTAAAAGAGTAAAAGGGTTAGGATCTTCCCAATTTTTTTTTTCTCCATTTTCTTCCATTACTAAATTTTTAAATGAATAAATGTTACATCCTATAAAATTTACATAATTTTTATTTAAGTAACTTTTTTAAAAGTATAGAAAATGGAAGAAATGGAAAAAACAAATGGAAAGGATCCATTCCCTGAGTAAAGAGAATAATACTATGGTAGCCTTTTTCCATGAAGTTTTAACCATCATTTTTTAATGAACCTTGTT 5141 0.3953 MIPYLNLQGTPVNIIVGSHVWIEDPDVSWIDGQVLKISGKEADIETTNGKQVVANLSKLYPKDMEAPPGGVDDMTKLSYLHEPGVLQNLKARYELNEIYTYTGNILIAINPFQRLPHIYGAHMMQQYKGAPFGELSPHVFAVADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMQYLAFLGGRAGTEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKNGRISGAAIRTYLLERSRVCQINDPERNYHCFYLLCAAPQEELEKYKLGSPKSFHYLNQSKCFELADISDAREYLATRRAMDIVGISQKDQEAIFRVVAAILHIGNIDFTKGKEIDSSVPKDDKSKFHLKTTADLLMCDADALEDALCKRVMITPEEVIKRSLDPQSAMVSRDGLAKTIYSRLFDWLVDKINNSIGQDPNSKSLIGVLDIYGFESFKSNSFEQFCINFTNEKLQQHFNQANTCLKWNKKNTQRSRSIGVTLNLLTTKMFWTLLRRFSSSPFVPSLSSMHWKPGGIIALLDEACMFPKSTHETFANKLYQTFKNHKRFIKPKLSRTDFTIAHYAGEVLYQSDQFLDKNKDYVVPEHQDLLSASKCSFVSGLFPPLPEESSKSSKFSSIGSRFKLQLQSLMETLNSTEPHYIRCVKPNNLLKPAIFENVNIMQQLRCGGVLEAIRISCAGYPTRRAFFEFINRFGLLAPEVMEANFDEKTGCQKVLEKMGLSGYQIGKTKVFLRAGQMAELDAQRAQVLSNAAKIIQRRVRTHQARKHYLALRKKSIYVQSRWRGRLACKLYEHLRREAAAKKIQKNVRRYEARKAYKELHVAVLTLQTAIRAVSARKKFRFRKQTKASIIIQARWRCHKAALYHKRLKKGALVTQCKWRGRIARKELRKLKMAARETGALQEAKDKLEKRVEELTWRLQLEKGLRTNLEESKAQEIAKLQTSLQEMQNKFDESNAMLVKERENVKKVVEEAPPVIKETKVIVEDTQKIESLTAEVENLKTSLESEKQKADDFERRYKEAQVCSEERGKKLEDTEKKARQLQESLTRLEEKITNLESENQVLRQQAVSMAPNKFLSGRSRSIIQRTESGHIVPEAKTPMSNQEMHSTSMHRREPSDGLDDKPQKSLNEKQQENQELLIRCIAQHLGFAGNRPIAACIIYKCLLHWRSFEVERTSVFDRIIQTIGHAIETQDNNDVLAYWLSNASTLLLLLQRTLKASGAAGMAPQRRRSSSATLFGRMTQSFRGSPAGVNLSLINGSTSRGVDTLRQVEAKYPALLFKQQLTAYVEKIYGMIRDNLKKEISPLLGLCIQAPRTSRASLVKGTSRSVNTEAQRALIAHWQGIVKSLGNFLNTLKANHVPPFLVRKVFTQIFSFINVQLFNSLLLRRECCSFSNGEYVKAGLAELEHWCYKATDEYAGSAWDELKHIRQAIGFLVIHQKPKKTLDEISHDLCPVLSIQQLYRISTMYWDDKYGTHSVSSDVISNMRVLMTEDSNNAVSNSFLLDDDSSIPFSVDDISKSMEQIDIADIEPPPLIRENSGFSFLLPRPD 1556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g00788 1556 Coils Coil 1041 1075 - -
Pste4g00788 1556 Coils Coil 901 928 - -
Pste4g00788 1556 Gene3D - 758 808 - -
Pste4g00788 1556 Gene3D - 809 856 - -
Pste4g00788 1556 Gene3D - 857 906 - -
Pste4g00788 1556 SMART iq_5 829 851 IPR000048 GO:0005515
Pste4g00788 1556 SMART iq_5 781 803 IPR000048 GO:0005515
Pste4g00788 1556 SMART iq_5 806 828 IPR000048 GO:0005515
Pste4g00788 1556 SMART iq_5 758 780 IPR000048 GO:0005515
Pste4g00788 1556 SMART iq_5 854 876 IPR000048 GO:0005515
Pste4g00788 1556 SMART iq_5 877 899 IPR000048 GO:0005515
Pste4g00788 1556 ProSiteProfiles Dilute domain profile. 1187 1499 IPR002710 -
Pste4g00788 1556 ProSiteProfiles IQ motif profile. 807 836 IPR000048 GO:0005515
Pste4g00788 1556 Pfam Myosin N-terminal SH3-like domain 16 56 IPR004009 GO:0003774|GO:0005524|GO:0016459
Pste4g00788 1556 Coils Coil 992 1033 - -
Pste4g00788 1556 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 44 809 IPR027417 -
Pste4g00788 1556 Gene3D - 691 757 - -
Pste4g00788 1556 Pfam IQ calmodulin-binding motif 880 899 IPR000048 GO:0005515
Pste4g00788 1556 Pfam IQ calmodulin-binding motif 809 828 IPR000048 GO:0005515
Pste4g00788 1556 Pfam IQ calmodulin-binding motif 856 871 IPR000048 GO:0005515
Pste4g00788 1556 Pfam IQ calmodulin-binding motif 761 779 IPR000048 GO:0005515
Pste4g00788 1556 Gene3D - 259 317 - -
Pste4g00788 1556 Gene3D Kinesin motor domain 72 686 IPR036961 -
Pste4g00788 1556 ProSiteProfiles IQ motif profile. 878 907 IPR000048 GO:0005515
Pste4g00788 1556 FunFam Myosin 2 319 434 - -
Pste4g00788 1556 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 15 64 IPR004009 GO:0003774|GO:0005524|GO:0016459
Pste4g00788 1556 MobiDBLite consensus disorder prediction 1095 1139 - -
Pste4g00788 1556 FunFam unconventional myosin-Va 857 905 - -
Pste4g00788 1556 Coils Coil 940 974 - -
Pste4g00788 1556 Gene3D - 446 647 - -
Pste4g00788 1556 MobiDBLite consensus disorder prediction 1116 1138 - -
Pste4g00788 1556 Gene3D Myosin VI head, motor domain, U50 subdomain 319 625 - -
Pste4g00788 1556 ProSiteProfiles IQ motif profile. 830 859 IPR000048 GO:0005515
Pste4g00788 1556 ProSiteProfiles IQ motif profile. 759 786 IPR000048 GO:0005515
Pste4g00788 1556 PRINTS Myosin heavy chain signature 203 230 IPR001609 GO:0003774|GO:0005524|GO:0016459
Pste4g00788 1556 PRINTS Myosin heavy chain signature 99 118 IPR001609 GO:0003774|GO:0005524|GO:0016459
Pste4g00788 1556 PRINTS Myosin heavy chain signature 436 464 IPR001609 GO:0003774|GO:0005524|GO:0016459
Pste4g00788 1556 PRINTS Myosin heavy chain signature 156 181 IPR001609 GO:0003774|GO:0005524|GO:0016459
Pste4g00788 1556 Pfam Myosin head (motor domain) 71 744 IPR001609 GO:0003774|GO:0005524|GO:0016459
Pste4g00788 1556 PANTHER MYOSIN 61 1487 - -
Pste4g00788 1556 FunFam unconventional myosin-Va 761 809 - -
Pste4g00788 1556 Pfam DIL domain 1375 1478 IPR002710 -
Pste4g00788 1556 FunFam Myosin heavy chain 259 314 - -
Pste4g00788 1556 CDD MYSc_Myo11 83 744 IPR036018 -
Pste4g00788 1556 ProSiteProfiles IQ motif profile. 782 811 IPR000048 GO:0005515
Pste4g00788 1556 CDD MyosinXI_CBD 1138 1522 IPR037975 GO:0007015
Pste4g00788 1556 ProSiteProfiles Myosin motor domain profile. 69 756 IPR001609 GO:0003774|GO:0005524|GO:0016459
Pste4g00788 1556 SMART MYSc_2a 64 757 IPR001609 GO:0003774|GO:0005524|GO:0016459
Pste4g00788 1556 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 809 907 IPR027417 -
Pste4g00788 1556 SMART DIL_2 1374 1481 IPR002710 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g00788 Pste-Chr4 6140138 6154340 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g00788 9 1556 Myosins gene family AT1G54560 80.323 0.0 2597
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste4g00788 4 6140138 6154340 Pste4g00788 4 6140138 6154340 ECH
Pste5g03303 5 26246589 26260146 Pste4g00788 4 6140138 6154340 PCT