Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g00768 AGATGGATGGAAAAACTGAGGATGAAGTGGTGGATATTGAGAGTGCTTCTAGTGGTTCTTTCGATGATGAGGAATCTTTAGTTCGTGAAATAGATGATGGAGAGCATCTTGAGGAGCCGTTAACAGAAGAGGAAATACAAGATCTTATTTCTGAGTTGTTAGAAGTGGAGAGTAAGTTGGAAACTGCTGTTGCTGATGAGATGTCAACTTTTAAAGAGGAGTGGGAAGCTGTTCTGGATGACCTTGAAACTGAAAGTTCCCACTTATTGGAACAACTTGATGGGGCTGGCATTGAGCTTCCTAGCCTTTATAAGTGGATTGAAAGAGAGGCTCCGAATGTTTGCTCCACTGAAGCATGGAAAAAGAGGAATCACTGGGTTGGTTCTCTGGCAACTGCTGAAATTGCTGAGTCAATTGCTGATGCTGAGAAAGATCTACAAGTAAACAGACCTGTTAGAAGGCGACATGGTAAATTACTGGAAGAGGGTGCTAGTGGTTTTCTCCAAAAAAAACTTTGTGATGAAACCCAGGAACCACTAAAGAACAAAAATGAGGGGGATTGGGATCTGTTCAATAAATTAGTTTCTGATGGGAGTGGCATTGATACTTCATTTGGTAGTAAGCATTGGGCTTCTGTTTATTTGGCCAGCACTCCACAGCAAGCTGCCTTGATGGGACTCAAATTTCCTGGAGTTGATGAGGTGGAGGAGATTGATGATGTTGATGGCAATTCCACGGATCCATTTATTGCAGCTGCCATTGCAAATGAAAGAGAATTGGATCTTTCTGAAGAGCAAAGGAGACAATTTAAAAAGGTCAAAGAAGAGGATGATGTAATTGTTGATAAGCAACTTCAAATCCGTTTGAAACATAGGAGATATAAAAAGAAAAGTAAACAACGAGAAAGGAGCACCCCTATCCTGTTGATGGAGAGCCACATGTCAAATCCTTCATCTGTTGATCATTTAAACCCTATTATGAAGGAAGGAACAAGCGATGATGGGAAAATTGTGTCTGAGAATGGCAATGATACATGTGTGCTAATGGAGGCCGATAAAATCAAAGGTTTTGATGCCAACCACTATCTTGACAAAGAAAAGCCTATGAGTAATGATGGTTTTTCAGATCCACCCAAATCTTCACTAGATGATGTTATTCAACAACGAGGAATCAAACGTGTAAACAGTGGTGAGCTAGATGCTGACAATAAAAAGTGTCGTGTGGTTGTTATTGACAGTGATAATGAAGCAGATGTCTCTGAAGAGAAATTAGATTGCAATACTCAAGAGGATCTGGGACAAGATTGTTCAGAGGGTTACTGTAGATGGTGTGGTGGAAGCAGTGAATTAATTAGCTGTACATTATGCAAGGTTTTATTCTGCACCAAATGTTTAAAAAAGAATCTTGGTGTAGAATTGGTTCCTGGAGCTCAGGCCACTAGCTTGCATTGTTGTTGTTGCCATCCAAATCTTTTGCAAAGACTATCCTTGCAACTAGAGAAAGCTAAGGGCTCATCTGAGATAATAGTGTCCAGTTCTGGCAGTGATTCAGACGACACAGATAATTCAGATAATTCAGACGATTCAGATGCAGAGTTTACTGTTTCAATCAGCTCCAAGCGAAGACCCAAAAAGAAGATTCGGAGGATACTTGATGATACTGAATTAGGAGAAGAGACAAAAAGGAAAATAGCTATTGAAAAGGAACGTCAGGAACGCCTGAAGTCTTTACGAGGGCAGTTTTCTGCTTCATCTATTGAGATGAGCTCTGATGGCTGTAATGGGAATCTATCAGAAGGTGCAAGTGTTGAAGTTCTTGGTGATGCACTAGGAGGTTACATAGTGAATGTTGTGAGGGAGAAAGGTGAAGAAGCTGTCAGAGTTCCTCCTAGCATCTCAATTAAACTGAAGGCCCATCAGATTGCCGGAATAAGATTCATGTGGGAAAATATAATACAATCAATCAGAAAAGTGATAGCTTTTTTGTACACTGCAATGAGATGTGTTGATTTGGGGCTAAGAACTGCACTTATAGTCACACCTGTAAACGTGCTACATAATTGGCGGCAGGAGTTCATCAAGTGGAGACCTTCTGAGTTAAAGCAACTCAAGGTCTTCATGCTGGAAGACGTAGCAAGAGATAGAAGGGCTGAATTGCTTGCAAAATGGAGAGCTAAAGGTGGTGTTTTTTTAATTGGTTATACTGCTTTCCGAAATTTGTCTTTTGGGAAGCATGTAAAAGATCGACACATGGCCAGAGAAATTTGCCATGCTTTGCAGGATGGACCCGACATTCTTGTCTGTGATGAAGCCCATATGATAAAAAATACCAACGCTGAAGTGACTCAAGCCCTGAAACAAGTAAAATGCCAGAGAAGAATTGCTCTTACCGGGTCACCTCTTCAAAACAATCTCATGGAATATTACTGTGTAAGTTTCTTCCAAAATCCGATAGAGAATGGACAACACACCAATTCAACTTTGACTGATGTGAAAATTATGAACCAGAGGTCTCATATCCTCTATGAACAATTAAAAGGCTTTGTTCAAAGAATGGACATGAATGTGGTGAAGAAGGATCTACCACCCAAAACTGTCTTTGTGATAACTGTCAAGCTTTCTCCCTTGCAGAGAAAATTGTACAAGAGATTCCTTGATGTGCATGGGTTCACTACCCAGGTGCATCCTGAAATGTTAAGGAAGAGGTGTTTTTTTGCTGGGTACCAGGCATTGGCTCGGATATGGAACCACCCTGGGATCTTGCAGTTAACAAAAGAAGTAAAGGACTTTGAAAAACATGAAGATGCCGTTGAGAATTTTCTTGTGGATGATAGTTCCAGTGACGAAAATTCTGATTATAATGTTCTTACTGGAGAGAAGATGAAGTATGCAAATGATTTGTCGCAACAGAAAGATAATGGCTTTTTCCTGAAGGGTTGGTGGAATGATCTTCTTCATGGAAAAATTTATAAAGAGATTGATCACAGTGGCAAGATGGTTTTGCTAATGGAGATACTAACCATGAGTTCCGATGTGGGTGATAAGGTGTTAGTTTTTAGTCAGAGCATACCAACCCTTGACCTCATTGAACTTTATCTCTCTAGGATACCTCGACGTGGCAAACGAGGGAAGTTTTGGAAGAAGGGAAAAGATTGGTATAGGTTGGATGGAAGGACAGAGAGTTCTGAGAGGCAGAAGCTAGTCGAGAGATTTAATGAGCCGTCGAATAAGAGGGTAAAGTGCACTTTGATTTCAACCAGAGCAGGCTCTTTGGGTATTAATCTTCATGCAGCTAATCGAGTTGTTATAGTTGATGGTTCTTGGAACCCAACATATGATCTCCAGGCTATTTATCGATCATGGAGG 3365 0.4059 MDGKTEDEVVDIESASSGSFDDEESLVREIDDGEHLEEPLTEEEIQDLISELLEVESKLETAVADEMSTFKEEWEAVLDDLETESSHLLEQLDGAGIELPSLYKWIEREAPNVCSTEAWKKRNHWVGSLATAEIAESIADAEKDLQVNRPVRRRHGKLLEEGASGFLQKKLCDETQEPLKNKNEGDWDLFNKLVSDGSGIDTSFGSKHWASVYLASTPQQAALMGLKFPGVDEVEEIDDVDGNSTDPFIAAAIANERELDLSEEQRRQFKKVKEEDDVIVDKQLQIRLKHRRYKKKSKQRERSTPILLMESHMSNPSSVDHLNPIMKEGTSDDGKIVSENGNDTCVLMEADKIKGFDANHYLDKEKPMSNDGFSDPPKSSLDDVIQQRGIKRVNSGELDADNKKCRVVVIDSDNEADVSEEKLDCNTQEDLGQDCSEGYCRWCGGSSELISCTLCKVLFCTKCLKKNLGVELVPGAQATSLHCCCCHPNLLQRLSLQLEKAKGSSEIIVSSSGSDSDDTDNSDNSDDSDAEFTVSISSKRRPKKKIRRILDDTELGEETKRKIAIEKERQERLKSLRGQFSASSIEMSSDGCNGNLSEGASVEVLGDALGGYIVNVVREKGEEAVRVPPSISIKLKAHQIAGIRFMWENIIQSIRKVIAFLYTAMRCVDLGLRTALIVTPVNVLHNWRQEFIKWRPSELKQLKVFMLEDVARDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRHMAREICHALQDGPDILVCDEAHMIKNTNAEVTQALKQVKCQRRIALTGSPLQNNLMEYYCVSFFQNPIENGQHTNSTLTDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRKLYKRFLDVHGFTTQVHPEMLRKRCFFAGYQALARIWNHPGILQLTKEVKDFEKHEDAVENFLVDDSSSDENSDYNVLTGEKMKYANDLSQQKDNGFFLKGWWNDLLHGKIYKEIDHSGKMVLLMEILTMSSDVGDKVLVFSQSIPTLDLIELYLSRIPRRGKRGKFWKKGKDWYRLDGRTESSERQKLVERFNEPSNKRVKCTLISTRAGSLGINLHAANRVVIVDGSWNPTYDLQAIYRSWR 1121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g00768 1121 SMART ultradead3 631 833 IPR014001 -
Pste4g00768 1121 Pfam Helicase conserved C-terminal domain 999 1121 IPR001650 -
Pste4g00768 1121 Gene3D - 854 872 IPR027417 -
Pste4g00768 1121 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1003 1121 IPR001650 -
Pste4g00768 1121 Coils Coil 45 65 - -
Pste4g00768 1121 Gene3D - 873 946 - -
Pste4g00768 1121 Pfam SNF2-related domain 657 919 IPR000330 GO:0005524|GO:0140658
Pste4g00768 1121 Coils Coil 71 91 - -
Pste4g00768 1121 MobiDBLite consensus disorder prediction 507 534 - -
Pste4g00768 1121 CDD SF2_C_SNF 991 1121 - -
Pste4g00768 1121 Gene3D - 611 850 IPR038718 -
Pste4g00768 1121 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 621 850 IPR027417 -
Pste4g00768 1121 SMART helicmild6 1026 1121 IPR001650 -
Pste4g00768 1121 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 658 817 IPR014001 -
Pste4g00768 1121 MobiDBLite consensus disorder prediction 1 25 - -
Pste4g00768 1121 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 856 1121 IPR027417 -
Pste4g00768 1121 Gene3D - 970 1121 IPR027417 -
Pste4g00768 1121 PANTHER RAD54-LIKE 31 1121 IPR044574 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g00768 Pste-Chr4 5940242 5978785 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g00768 1009 1121 RAD5 or RAD16-like Gene Family AT5G43530 37.168 8.51e-13 71.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pste4g00768 SNF2_N 1.2e-32 CL0023