Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g00657 GAACAGGAAGAAAAAGCAAGTGAGGACGGAGCACGTCACGCGAAGGAGAAAAGTAAAAAAAAAAAAGAAGAAAGAGATGGCACGTGTGGGAGAGAAAAAGAAGAAAATATGAAGAGAGGAGAAGTTGTTTCTGTATTGAGGAATGGGGTGGAGAAGGTGGGAAGGACATGTGAATGGAGAAAAAGCAAAAGCTCAAGCTCAAGCTCAAGCTCAAGCTCAAGCTCATCGTCCCTAATCCTCATGGACATATTATTCCACGCCGCTATTCCCCAATCCCTCAAGTCACTGTGGATGTTGAATTTGAGGACTGCTGAGACAATGGAATCTGGAACTTATCCGGAGCGTCCTGGGGAGCCAGATTGTTCATATTACATCAGAACGGGACTTTGTAGATTTGGCGCTACTTGTCGATTTAATCATCCTCCTAACAGGAAGCTGGCTATTGCCACTGCAAGGATGACAGGCGAGCTCCCAGAAAGAATAGGACAACCAGAATGTCAGGCATGTACTATGTTAACATCAAACCTTGTACTGCAGAGCACTGATTTGTATTTTGGCATGCATTCTTTATTTAAGCATTCACTAATCTCCATAACAAAGAGATATCTTTTTTCTGTTTTACAGTACTATCTAAAGACAGGAACTTGCAAATTTGGAGCCACATGCAAATTTCATCATCCTAAAGACCAGGCTGGGGTTGCTGGAAGAGTTGCCTTAAATATTTTAGGCTATCCTCTCCGCCCTAGTGAGCCTGAATGCACTTATTATTTGAGAACAGGACAATGCAAATTTGGGAACACATGCAAATTCCACCATCCTCAACCGAGTAATATGATGCTTTCATTACGGGGTTCTCCTGTTTACCCTACCGTCCATTCTCCAACTACACCAGGTCAGCAGTCATATGCTGGAGGAATTACAAATTGGTCAAGGGCATCATACATTCCTAGTCCTCGCTGGCAAGGTCCTTCAAGTTATGCACCCTTAATTCTACCTCAGGGAGTGGTTTCAGTACCTGGATGGAGTGCATACAGTGGTCAAATGGGATCAATCTCTACTTCAGAAAGTCCACAGCAAGCAATGAGAAATGGTCAAACATATGGAACTTCTCGCCAAGGTGAGCTAGCAAACACAGGATCACGTGGGGCATATTCTCAATTCCATTCCGGCACCATTCCAGTAGGGTTTTATCCATTGCAGAGGGAGAACATATTTCCTGAGAGACCTGATCAGTCCGAATGCCAATTCTACATGAAGACAGGAGATTGTAAGTTTGGTGCAGTCTGTCGGTTCCACCACCCACGTGAGAGGCTGCTTCCTGCTCCTGACTGTCTCTTGAGTCCTATAGGCCTTCCTTTGCGTCCTGGAGAACCATTGTGTGTCTTCTATTCTAGATATGGCATATGCAAATTTGGCCCAAGTTGCAAGTTTGACCACCCAATGGGAGTTTTCTCCTATAATATATCTGCATCTCCTTCAGCTGATACCCCAACCAGGCATCTGTTAGGTTCTTCATCGGGAACTGCTGCATTAAATTTATCTTCTGAAGGACTAGTTGAATCAAGCTCTGCAAAGCCCAGGCGGCTTCCATTATCAGATACAAGACAGATTTCTTCTGGTGATGATGACATTGATGATGATGAATCTTGA 1650 0.4412 EQEEKASEDGARHAKEKSKKKKEERDGTCGREKEENMKRGEVVSVLRNGVEKVGRTCEWRKSKSSSSSSSSSSSSSSLILMDILFHAAIPQSLKSLWMLNLRTAETMESGTYPERPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLAIATARMTGELPERIGQPECQACTMLTSNLVLQSTDLYFGMHSLFKHSLISITKRYLFSVLQYYLKTGTCKFGATCKFHHPKDQAGVAGRVALNILGYPLRPSEPECTYYLRTGQCKFGNTCKFHHPQPSNMMLSLRGSPVYPTVHSPTTPGQQSYAGGITNWSRASYIPSPRWQGPSSYAPLILPQGVVSVPGWSAYSGQMGSISTSESPQQAMRNGQTYGTSRQGELANTGSRGAYSQFHSGTIPVGFYPLQRENIFPERPDQSECQFYMKTGDCKFGAVCRFHHPRERLLPAPDCLLSPIGLPLRPGEPLCVFYSRYGICKFGPSCKFDHPMGVFSYNISASPSADTPTRHLLGSSSGTAALNLSSEGLVESSSAKPRRLPLSDTRQISSGDDDIDDDES 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g00657 549 MobiDBLite consensus disorder prediction 349 374 - -
Pste4g00657 549 SMART c3hfinal6 205 228 IPR000571 GO:0046872
Pste4g00657 549 SMART c3hfinal6 115 142 IPR000571 GO:0046872
Pste4g00657 549 SMART c3hfinal6 247 274 IPR000571 GO:0046872
Pste4g00657 549 SMART c3hfinal6 454 481 IPR000571 GO:0046872
Pste4g00657 549 SMART c3hfinal6 408 435 IPR000571 GO:0046872
Pste4g00657 549 PANTHER PROTEIN PHOSPHATASE RELATED 16 500 - -
Pste4g00657 549 SUPERFAMILY CCCH zinc finger 251 275 IPR036855 GO:0046872
Pste4g00657 549 ProSiteProfiles Zinc finger C3H1-type profile. 408 436 IPR000571 GO:0046872
Pste4g00657 549 ProSiteProfiles Zinc finger C3H1-type profile. 201 229 IPR000571 GO:0046872
Pste4g00657 549 SUPERFAMILY CCCH zinc finger 410 438 IPR036855 GO:0046872
Pste4g00657 549 ProSiteProfiles Zinc finger C3H1-type profile. 454 482 IPR000571 GO:0046872
Pste4g00657 549 MobiDBLite consensus disorder prediction 517 537 - -
Pste4g00657 549 MobiDBLite consensus disorder prediction 1 41 - -
Pste4g00657 549 MobiDBLite consensus disorder prediction 517 549 - -
Pste4g00657 549 ProSiteProfiles Zinc finger C3H1-type profile. 115 143 IPR000571 GO:0046872
Pste4g00657 549 ProSiteProfiles Zinc finger C3H1-type profile. 247 275 IPR000571 GO:0046872
Pste4g00657 549 MobiDBLite consensus disorder prediction 1 43 - -
Pste4g00657 549 SUPERFAMILY CCCH zinc finger 457 481 IPR036855 GO:0046872
Pste4g00657 549 Gene3D - 107 177 - -
Pste4g00657 549 FunFam CCCH type zinc finger protein 406 491 - -
Pste4g00657 549 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 456 481 IPR000571 GO:0046872
Pste4g00657 549 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 410 435 IPR000571 GO:0046872
Pste4g00657 549 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 117 142 IPR000571 GO:0046872
Pste4g00657 549 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 250 274 IPR000571 GO:0046872
Pste4g00657 549 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 208 228 IPR000571 GO:0046872
Pste4g00657 549 Gene3D - 205 283 - -
Pste4g00657 549 Gene3D - 406 491 - -
Pste4g00657 549 SUPERFAMILY CCCH zinc finger 120 143 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g00657 Pste-Chr4 5018889 5023765 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g00657 96 547 C2H2 Transcription Factor Family AT3G02830 55.098 1.01e-166 476
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pste4g00657 zf-CCCH 7e-09 CL0537