Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g00642 CTAAACAAAATGATGATACAACTTAACCTTCTGGCCCTAATAACTTTGGTATGGGGTAGTAGTATTAATGTTGAATATGCAGTTGCAACCCCAAATATAATAAACAGTGGGTGTAGCCCTTTCAACGCTTCCAACCCAAGTAGCTTCTTTGCAAATGTGAATGATACATTCAAAGAGCTGAGAGGAGAAATTAATAGAAACAAAAGCATGCACTTTGGCACATCAAAGAAATCGAGGGGTGAAACCAATGAACTTGGTGGGGGAGTAACATGTGGGAACTTCAGTTCAAATGCCACTAATTTTAAAATAGTTGGAACACAAGCCCTAAAGGATCTCCAAACAGCAACACCTAAAACTAAAGGTTTTTATGCTGCTACTAAGACAAAGGTTGTTGGTGGCAATGCAATTTATGCCATTGCACAGTGTGTTGAAACTGCCACAGAGGCTAAATGTTTGGATTGCATGACTGTTGGATACAACAATTTACAAAGTTGCCTCCCCAACACAGATGGTACAGCATATGATGCTGGTTGTTTTATGAGATACTCCATCACACCCTTGTTTGCTGATAATCAAACCATTGATATTGCACCCTATTTAAAACAAGGAGGTTCAAGCAAGAAGTGGGCCATTATAGGTGGTAGTGTTGGAGGTGTTATTCTCCTTCTTGTGTTATTTGTCCTGCAATGGTCTAGAAGAACAAAGAAGGTCACAGGGGTAAGTGACATATTGGGAGCAACTGAGTTAAAAGGTCCCATTAACTATAAGTATAAAGATTTAAAAGCTGCAACAAAAAATTTTAGTGCAGAAAATAAACTAGGAGAGGGAGGTTTTGGTGCAGTATACAAGGGAACTCTAAAGAATGGAAAAATTGTTGCCATCAAGAAATTAGTTTTGGGAAAATCAAGTAAGGTAGAGGATGATTTTGAAAGTGAAGTGAAGCTTATAAGCAATGTTCATCATCGACATCTTGTTAGACTTCTTGGTGACAAAGGTTCCCTTAATTGGAAACAACGATATGATATAATTTTAGGCACCGCAAAAGGATTGGCATATTTGCACGAGGAATTTCATGTGTCCATCATACATAGAGACATAAAGACTGCTAATATCCTTTTAGATGATCATCTTCAACCCAAAATTGCTGATTTTGGGTTGGCAAGGCTTCTTCCTCGAGATCGTTCTCATCTTAGCACAAAATTCGCAGGAACATTGGGATACACAGCACCTGAATATGCAATACATGGTCAATTGTCAGAGAAGGCTGACACTTACAGTTATGGTATTGTGATCCTAGAAATCATAAGTGGTCAAAAGAGTACCGATGTGAAAATGGTGGAAGGGGATCGTGAATACCTTCTTCAAAGAGCATGGAAACTATATGAGAAAAACATGCACTTGGAGCTTGTGGACAAGGAGATAGACCTGAGTGAATATGATGCAAAAGAAATAAAGAAAATTATAGAAATTGCATTATTATGCACTCAAGCTTCAGCAGCAGCAAGACCAACAATGTTTGAATTGATAGTGCTACTAAAAAGCAAGAGCTTAATGGATTACTTGCGACCAACTATGCCTGTGTTTGTTGAAACAAATATGATAAATAAAGAGGACATCCCTATTGGTTCATCTAATGCTACTATCTCCATTTCTATTCTATCGGCCCGATGA 1671 0.3812 LNKMMIQLNLLALITLVWGSSINVEYAVATPNIINSGCSPFNASNPSSFFANVNDTFKELRGEINRNKSMHFGTSKKSRGETNELGGGVTCGNFSSNATNFKIVGTQALKDLQTATPKTKGFYAATKTKVVGGNAIYAIAQCVETATEAKCLDCMTVGYNNLQSCLPNTDGTAYDAGCFMRYSITPLFADNQTIDIAPYLKQGGSSKKWAIIGGSVGGVILLLVLFVLQWSRRTKKVTGVSDILGATELKGPINYKYKDLKAATKNFSAENKLGEGGFGAVYKGTLKNGKIVAIKKLVLGKSSKVEDDFESEVKLISNVHHRHLVRLLGDKGSLNWKQRYDIILGTAKGLAYLHEEFHVSIIHRDIKTANILLDDHLQPKIADFGLARLLPRDRSHLSTKFAGTLGYTAPEYAIHGQLSEKADTYSYGIVILEIISGQKSTDVKMVEGDREYLLQRAWKLYEKNMHLELVDKEIDLSEYDAKEIKKIIEIALLCTQASAAARPTMFELIVLLKSKSLMDYLRPTMPVFVETNMINKEDIPIGSSNATISISILSAR 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g00642 556 Pfam Protein kinase domain 332 506 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste4g00642 556 Pfam Protein kinase domain 268 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste4g00642 556 SMART serkin_6 267 518 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste4g00642 556 Pfam Salt stress response/antifungal 92 183 IPR002902 -
Pste4g00642 556 FunFam Cysteine-rich receptor-like protein kinase 2 86 187 - -
Pste4g00642 556 Gene3D - 92 186 IPR038408 -
Pste4g00642 556 ProSitePatterns Serine/Threonine protein kinases active-site signature. 361 373 IPR008271 GO:0004672|GO:0006468
Pste4g00642 556 ProSiteProfiles Protein kinase domain profile. 267 521 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste4g00642 556 Gene3D Transferase(Phosphotransferase) domain 1 326 521 - -
Pste4g00642 556 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 333 534 - -
Pste4g00642 556 FunFam Cysteine-rich receptor-like protein kinase 2 317 520 - -
Pste4g00642 556 SUPERFAMILY Protein kinase-like (PK-like) 255 536 IPR011009 -
Pste4g00642 556 Gene3D Phosphorylase Kinase; domain 1 246 325 - -
Pste4g00642 556 ProSitePatterns Protein kinases ATP-binding region signature. 273 296 IPR017441 GO:0005524
Pste4g00642 556 ProSiteProfiles Gnk2-homologous domain profile. 82 187 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g00642 Pste-Chr4 4877164 4889173 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g00642 89 554 Receptor kinase-like Gene Family AT1G70520 35.010 1.94e-89 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Pste4g00642 Pkinase 4.8e-27 CL0016