Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g00625 ATGGCTCCTACACTTCAACTTGCACTCTCTTATATACTCACTATTGTAGCTTCACTTTCACTACTCCTTGTGGTTCCTTCCTCTTGTTTCAACCCTAGAAAGCTTGTGAATGGTTCCTATGATTCATATTCTTTGTATGGTTCAGATTGGTCACCTGCTGTGGCCACTTGGTATGGACCTGCCCAAGGGGATGGCAGTGAAGGTGGAGCTTGTGGTTATGGAAGTGCTGTTGGGGAATCTCCATTCTCATCATTCATATCTGCTGGAAGCCCACTTTTGTATGAATCAGGCAAAGGCTGTGGTTCTTGCTATGAGGTGAAGTGCACAGAGAATTATGCATGCTCAGGGAACCCTGTGAGGGTAGTGATCACTGATGAGTGTCCAGGGTGTGGCTCAGATGCTCAATATCATTTTGATTTGAGTGGCACTGCTTTTGGTTCCATGGCTGTTTCATATCAAAACCAGAAGCTACGCGATGCAGGCAAAATAGAAATTCAATTTAGAAGAGTTGAATGCAACTACCAGGGTGAATCAATAGCTTTTCGCGTGGACACAGGATCCAACAAAGAATATTTTGCAATATTGATTGAGTTTGAAGATGGGGATGGTGACCTTGACAAAGTGGAACTCAGAGAAGCACATGATTCAGCTCCATGGCTCTCCATGCAGAGATCATGGGGTGCAGTTTGGAAATTTGACAAAGGGTCACCACTCATTGCACCATTCTCAATTAGACTAACCACTCTTAAATCTGGCAAAACTATTAATGTGTTTTAG 777 0.435 MAPTLQLALSYILTIVASLSLLLVVPSSCFNPRKLVNGSYDSYSLYGSDWSPAVATWYGPAQGDGSEGGACGYGSAVGESPFSSFISAGSPLLYESGKGCGSCYEVKCTENYACSGNPVRVVITDECPGCGSDAQYHFDLSGTAFGSMAVSYQNQKLRDAGKIEIQFRRVECNYQGESIAFRVDTGSNKEYFAILIEFEDGDGDLDKVELREAHDSAPWLSMQRSWGAVWKFDKGSPLIAPFSIRLTTLKSGKTINVF 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g00625 258 SUPERFAMILY Barwin-like endoglucanases 44 176 IPR036908 -
Pste4g00625 258 Gene3D - 34 172 IPR036908 -
Pste4g00625 258 CDD DPBB_EXPB_N 50 172 - -
Pste4g00625 258 SMART dpbb_1 86 167 IPR007112 -
Pste4g00625 258 SUPERFAMILY PHL pollen allergen 178 255 IPR036749 -
Pste4g00625 258 Pfam Lytic transglycolase 87 166 IPR009009 -
Pste4g00625 258 Gene3D - 173 257 IPR036749 -
Pste4g00625 258 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 68 177 IPR007112 -
Pste4g00625 258 PANTHER EXPANSIN-B3 23 255 - -
Pste4g00625 258 Pfam Expansin C-terminal domain 179 255 IPR007117 -
Pste4g00625 258 PRINTS Major pollen allergen Lol pI signature 181 196 IPR005795 GO:0005576|GO:0019953
Pste4g00625 258 PRINTS Major pollen allergen Lol pI signature 228 245 IPR005795 GO:0005576|GO:0019953
Pste4g00625 258 PRINTS Major pollen allergen Lol pI signature 108 118 IPR005795 GO:0005576|GO:0019953
Pste4g00625 258 PRINTS Major pollen allergen Lol pI signature 88 99 IPR005795 GO:0005576|GO:0019953
Pste4g00625 258 PRINTS Major pollen allergen Lol pI signature 149 164 IPR005795 GO:0005576|GO:0019953
Pste4g00625 258 PRINTS Major pollen allergen Lol pI signature 197 212 IPR005795 GO:0005576|GO:0019953
Pste4g00625 258 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 190 258 IPR007117 -
Pste4g00625 258 PRINTS Expansin/Lol pI family signature 160 176 IPR007118 GO:0005576
Pste4g00625 258 PRINTS Expansin/Lol pI family signature 90 108 IPR007118 GO:0005576
Pste4g00625 258 PRINTS Expansin/Lol pI family signature 67 85 IPR007118 GO:0005576
Pste4g00625 258 PRINTS Expansin/Lol pI family signature 49 64 IPR007118 GO:0005576
Pste4g00625 258 PRINTS Expansin/Lol pI family signature 219 233 IPR007118 GO:0005576
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g00625 Pste-Chr4 4761816 4766657 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g00625 27 255 Expansin Gene Family AT1G65680 55.459 1.53e-94 277