Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g00607 CAAAAAAAAAACCCAAAAGATAGGGAAAAAAATTTCATCTAGACATTAATGTAGAGGATACAGATTTATCTATGTTGCTTCCTCAATCGTCTTCTTCCCCCGTCTTGTTAGGGTTTGTAGAGTTTGCATTTTGTCTTCAATTCTCTACGCTCATCGTTCTCATCACCGGACTTCGAAATTTTCCTTTATTTTTTATCGATACTTCATTGTATTAACCCCAATTTTTCACGTATTCGACCATACAATAGAAAATCGCAATTCCTCCACGATTTCGTTTAGATTGATGTATTTCCCACAATTTATGAAGTTACCTGGACCTTGAGTTAGCTACTATTGACGTGATTTCGAGTTTTACTATGCAGTGGAAGATCAGAGAACCAACAAACTCCACATCTTTCACTTCATAAGTACTCTTCTTATTAAAGGAAGACAAATCAGAGGCATTGTTGCCTATTTCCTTTTTGCATGAGGTTATGATGGGGACCGAGCTAATGAGAATATGTGTTAAAGAAGATAATGATGATTTTCCGTCAGTTCCACCAGGTTTTGAATCATATACATCTTTCTCACTGAAGAGGGTAGAAAACAATGAAAAACAAGATGATAAAAATATGACCAGTTGTTCACCCCCTACAAGTGTTTCTGAATCACCATCAACTCATGTGGAAAATGATGTTCAAGTTCGTGATACTACAAAGGTTCCTAGATCCCTTCGACGAAGACCATGGATTAATTATGGACAATATGAGAACATTTCAGATGAAGAATCTGATTGTGAGCGGCTTGATCAAAATTTCTCCTCAAGACTTTGTCTTCCTCGGGGAGTCATCCGTGGATGTCCAGATTGCAGCAATTGTCAAAAGGTTGTTGCCAGATGGCGACCAGAAGACGCTCGTAGGCCAAATCTTGAGGATGCTCCAATTTTCTACCCCACTGAAGAGGAGTTTCATGATACTTTGAAATATATATCAAGCATTCGCTCCAGGGCTGAGCCATATGGAATTTGTCGCATTGTTCCACCGCCTTCTTGGAAACCTCCCTGTCCTCTCAAGGACAAAAGTATATGGGAGGGTTCTAAATTTTCTACACGAGTTCAGAGGATTGACAAACTTCAGAATCGTGATTCAATGAGAAAGATGTCAAGGATTCAAGGTAATATGAAGAGGAAAAGGAGAAGATGCACAAGAATGGGGGTGGATAATGACTCTAGAAGAGGACCTAATGCAGGATTGTGTGAAGTAGAAAGGTTTGGGTTTGAACCTGGGCCAGAATTTACCTTGGAAACATTTCAGAGATATGCAGAAGAATTTAAGCTCAAATACTTCAGAAAAATTGAGAATGTATCTCATTTGGGTGCTAACTCAACAACTTTAAATGGTACCTCGGAGCCTTCTGTGGAAAACATTGAAGGTGAATATTGGCGGATGGTCGAGAATCCCACTGAAGAAATTGAGGTGCTTTATGGAGCTGATTTGGAAACTGGGATTTTTGGGAGTGGTTTCCCTAGCAAATCGAGTCAAGTGGGTTCTGCTTCACATGAACACTACATAAAATCTGGCTGGAATTTAAATAACTTTGCAAGGCTACCTGGATCTCTGCTTTCTTATGAAAGCAGTGATATATCTGGTGTTCTAGTGCCATGGTTGTACATAGGAATGTGCTTTTCCTCTTTTTGTTGGCATGTGGAAGATCACCATTTATATTCATTGAATTACATGCATTGGGGAGCTCCAAAAATGTGGTATGGTGTCCCTGGAAAAGATGCTTGTAAATTGGAAGAAGCCATGAGAAAGCATTTACCAGACCTTTTTGAAGAACAGCCTGACTTGCTTCATAAACTGGTCACTCAACTTTCTCCTTCTATTCTGAAGTCTAAAGGTGTACCCGTTTATAGGTGTGTCCAAAACCCTGGGGACTTTGTTCTGACATTTCCTCGAGCCTATCACTCAGGGTTTAATTGTGGCTTCAACTGTGCTGAGGCTGTTAATGTTGCTCCTGTTGACTGGCTGCCCCATGGGCATATTGCGATAGAGCTGTACCAGGAGCAGGGGCGCAAGACTTCAATATCACATGATAAGTTGTTGCTTGGGGCAGCTAGGGAAGCAGTACGAGCCCAATGGGAGCTTAATTTGCTGAAGAAGAATACTTTGGATAATCTACTATGGAAGGATGTCTGTGGAAAGGATGGCCTTTTGGCAAAAGCACTCAAGATGCGTGTGGAGATGGAGCAAGCAAGAAGGCAATTTCTCTGTAGTTCTTCACAGGCATTAAAAATGGAGACTACTTTTGATGCGACAAATGAAAGGGAATGTAGCATTTGTTTTTTTGATTTACACCTATCTGCAGCTGGTTGTCGCTGTTCTCCAGATAGATATGCTTGCTTGGACCATGCAAAACATTTTTGTTCATGCCCCTGGGATTCCAAATTTTTCCTTTTTCGGTATGATATTAGTGAGCTAAATATTCTTGTGGAGGCATTGGAAGGAAAATTAAGTGCAATATACAGGTGGGCCAAATCGGATCTTGGGCTGGCGCTATCTTCTTGTGTCTCAGCAGGCAAGGAAACAATACTTAAGGAACTGAAATCACATTCATCCAATATGTTTCATTCTTCCAGGGCCGCTGTGCCTAAAGAGATGGCTTTGCATCCATCAAATAAATATATTGACAATTCTCAAGTGATTGATGTCCCAGTAGAGAATCAAGCAAATAGCAAAGATCAGAGCTATTTTCAACAGAGGAAATCAGTTGAAGCTATTTCATCTTTGAGTTCCACAAAGGAATTGTTAACACTTAAAAGCTCAAAACCTACATCAACATCACATGCTTTATCTGTGCCTATTGCTCAACATGGAGGTGAAAAAAGTTCACTTTACAGACATAATAACAGTATTATACTTCTTAGTGATGATGAAGATGAAGAAAAGAAGATGTTTAATTCAAATAGAAGGAAGGAACTTTCTTCTCTGCTTGCAGGTCCTAGAGATAAGGCAAGCCCATGTAATGATATTAAGATTACAAACTTGACCATTTCTGTTACAGATACTGCTGTGATTGGTGAAAAGGATGCTATTACATTGCCCCATGAAAATATGAGTTCTGATTCAGCTCGGCTTTTGCAAGTGAAACAAGAATGTGATGAACGCACAGGAACAGTTCTAGCCTCTACCGCAGTTGACCTATCTTGTCATACGGGTCTTACAAGTACAGAATCTACTAGAAATATTCCAGCTCCTTCAAAAGTAGAGGCCAGTGATCATTGTTTGGAAAGTTTGGAGATTTGTCCACTGAACCCACAGCTTTCTGGCACTAAGGTTAAAACAGAAGATAATCTTGAAAAGTTTGTAGGATGTGTCACTTCTAATGTAGCAGACAATGCAAGAGCTCTTAGTGGGAACTTTTCTTGCGGTCCTAACAATTACCGTCAGAAAGGTCCTCGGATTGCAAAGGTTGTTCGGCGCATCAACTGTAATGTTGAGCCATTAGAATTTGGAGTTGTGCTTTCTGGAAAGTCTTGGTGCAGTAGTCAGGCTATATTTCCAAAGGGATTTAGAAGCCGTGTTAGATACATAAATGTCTTAGAACCATCCAGTATGTGTTACTATATTTCAGAAATACTCGATGCTGGACGTGGTTGGCCTCTATTTATGGTTTCCTTGGAAAATTGTCCAAGTGAGGTCTTCATTCATATGTCAGCTGCAAGATGCTGGGAACTGGCTATTGAGGCACTGGATCGAAGTCGAGTATGTAATGAATATTGGGACTCACGGCCCTACTCTCGTCCTCAGGGACAGATTTCACAATCATGCCAAACCAATGCAAATGGTGGAAATGGTAAAGGGGTTCTCTTGAGTAAGCAGATACCCGAAGAAGAAGTTGCAGTACTGAGGAGCCTATTTAAAAGGGCTAATACAGAAGAATTGAACTTATTGTACAGCATTCTTAGTGACAATAGGCCAGAAGCTGACAGGAACCTAATTGCGCAACTTCTAAATGAAGAGATTCACAGATCACAACCGCCCTAGGTAATTCATTATTTGGACGAAATTGTTCATACGCCTAACCTTTTCTTGACGTGTAAATTGTAGTTCCTCCGGGGTTGCACATGCAATTTCATGCAACCTTAATCTATGATTTTTTTCCACCTGAAGGAGGTTATAGAGAAAGAGAAAGAAAAAGGAAATAAAATTAGAAAAAGTGGGGGTAGGGGGAGGCCTATATACCTACAAAATTTTGCTCTTTTCTAGTGGCAACTGGTAGATGTGAAAGTTACCAAGTGTCACTTTGACTCTCTCATTTGAAACTCTTGAAGGGCAGGCTACCAGCCTTTATAATTGATATTGGTTCATATGTTGTACACACAGTTTGAAACTACATTTAGGTTCATGGTC 4391 0.4015 MMGTELMRICVKEDNDDFPSVPPGFESYTSFSLKRVENNEKQDDKNMTSCSPPTSVSESPSTHVENDVQVRDTTKVPRSLRRRPWINYGQYENISDEESDCERLDQNFSSRLCLPRGVIRGCPDCSNCQKVVARWRPEDARRPNLEDAPIFYPTEEEFHDTLKYISSIRSRAEPYGICRIVPPPSWKPPCPLKDKSIWEGSKFSTRVQRIDKLQNRDSMRKMSRIQGNMKRKRRRCTRMGVDNDSRRGPNAGLCEVERFGFEPGPEFTLETFQRYAEEFKLKYFRKIENVSHLGANSTTLNGTSEPSVENIEGEYWRMVENPTEEIEVLYGADLETGIFGSGFPSKSSQVGSASHEHYIKSGWNLNNFARLPGSLLSYESSDISGVLVPWLYIGMCFSSFCWHVEDHHLYSLNYMHWGAPKMWYGVPGKDACKLEEAMRKHLPDLFEEQPDLLHKLVTQLSPSILKSKGVPVYRCVQNPGDFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLPHGHIAIELYQEQGRKTSISHDKLLLGAAREAVRAQWELNLLKKNTLDNLLWKDVCGKDGLLAKALKMRVEMEQARRQFLCSSSQALKMETTFDATNERECSICFFDLHLSAAGCRCSPDRYACLDHAKHFCSCPWDSKFFLFRYDISELNILVEALEGKLSAIYRWAKSDLGLALSSCVSAGKETILKELKSHSSNMFHSSRAAVPKEMALHPSNKYIDNSQVIDVPVENQANSKDQSYFQQRKSVEAISSLSSTKELLTLKSSKPTSTSHALSVPIAQHGGEKSSLYRHNNSIILLSDDEDEEKKMFNSNRRKELSSLLAGPRDKASPCNDIKITNLTISVTDTAVIGEKDAITLPHENMSSDSARLLQVKQECDERTGTVLASTAVDLSCHTGLTSTESTRNIPAPSKVEASDHCLESLEICPLNPQLSGTKVKTEDNLEKFVGCVTSNVADNARALSGNFSCGPNNYRQKGPRIAKVVRRINCNVEPLEFGVVLSGKSWCSSQAIFPKGFRSRVRYINVLEPSSMCYYISEILDAGRGWPLFMVSLENCPSEVFIHMSAARCWELAIEALDRSRVCNEYWDSRPYSRPQGQISQSCQTNANGGNGKGVLLSKQIPEEEVAVLRSLFKRANTEELNLLYSILSDNRPEADRNLIAQLLNEEIHRSQPP 1183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g00607 1183 ProSiteProfiles JmjC domain profile. 360 523 IPR003347 -
Pste4g00607 1183 MobiDBLite consensus disorder prediction 36 76 - -
Pste4g00607 1183 ProSiteProfiles FYR domain FYRN motif profile. 993 1051 IPR003888 GO:0005634
Pste4g00607 1183 Gene3D - 1000 1113 - -
Pste4g00607 1183 ProSiteProfiles JmjN domain profile. 148 189 IPR003349 -
Pste4g00607 1183 MobiDBLite consensus disorder prediction 225 246 - -
Pste4g00607 1183 SMART cupin_9 360 523 IPR003347 -
Pste4g00607 1183 Pfam F/Y-rich N-terminus 1006 1048 IPR003888 GO:0005634
Pste4g00607 1183 Pfam jmjN domain 149 182 IPR003349 -
Pste4g00607 1183 Coils Coil 570 590 - -
Pste4g00607 1183 Gene3D Cupin 133 507 - -
Pste4g00607 1183 PANTHER LYSINE-SPECIFIC DEMETHYLASE 141 1033 - -
Pste4g00607 1183 SMART JmjN_1 147 188 IPR003349 -
Pste4g00607 1183 Pfam JmjC domain, hydroxylase 390 506 IPR003347 -
Pste4g00607 1183 MobiDBLite consensus disorder prediction 45 67 - -
Pste4g00607 1183 SMART fyrn_3 1007 1051 IPR003888 GO:0005634
Pste4g00607 1183 Pfam C5HC2 zinc finger 613 663 IPR004198 -
Pste4g00607 1183 SUPERFAMILY Clavaminate synthase-like 358 550 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g00607 Pste-Chr4 4613712 4624347 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g00607 2 1178 JUMONJI Transcription Factor Family AT1G08620 52.095 0.0 1153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Pste4g00607 JmjC 2.4e-46 CL0029