Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g00568 AACAAAAAAAACCCCATCCACAAAGCAACTTGAAATTTCCATCCTAGAATAAATTACCCATACCCGACGATGGCATTAGATTACTATTATAAAAGATAGTTAATATATAAAAGCCCCTCCTCTCCCATTTGGCGAAAAAATTGTGTGGGTTGAGGAGGGAAGCATTACTTTACAAGAGACAAAAGGCAAAGCCCTGAAACTGAAGGGGAAGAGAAGAATGGTTGGCATGTGGTGCATTCTTTTAATGTGCCTTATGAGTTCATTTTCACCCCCAATCAAAGCTGTCCTAAACCGCAGCCTGAGCTTGCCCCACCCAGAATACGTCGTCCAGGAACTTCAAAGGAAGGTGAATGCGTCAGTAGGGAGAAGAAGGGAAATGCTGTCGAAGGAGCAAGACACGTGTCTCACCGGAAACCCCATCGACGACTGCTGGCGGTGCGAGCCCAACTGGGCAGCCAACCGTCAGAAGCTGGCGGAGTGCAGCGTGGGGTTCGGGAAGGACGCCATGGGGGGGAAAGGAGGGCAGATCTACATGGTAACGGACTCGTCGGACCGTGACCCTGCCAACCCGGTTCCGGGCACTCTCCGTCACGCCGTGATCCAAGACGAGCCTCTCTGGATAGTGTTCGCGGCGGACATGACCATAAACCTGAAACACGAGCTCATCTTCAACAGCTACAAGACGGTGGACGGTCGTGGGGCCAACGTCCACGTGACCGGTCACGGCTGCATCACCCTCCAGTACGTGTCGAACATCATCATCCACAACATCCACGTCCACCACTGCAGGCCCTCCGGCAACACTATGATACGCGCCAGTCCCACACGCGTGGGGTTGAGAGGGAAATCGGACGGTGATGGGATATCCATCTTCGGGTCCCGCAAGATCTGGATCGATCACTGCTCCCTGTCTTACTGCGCGGACGGTTTGATCGACGCCATAATGGGGTCGACGGGGATTACTATTTCTAACAACCACTTCGCCCACCACGATGAGGTTATGCTTTTGGGACACGACGATAAGTACTTGCCCGATAGGGGAATGCAGGTTACCATTGCTTTTAACCACTTTGGAGAGGGTTTGGTTCAGCGCATGCCCCGCTGCAGGCTCGGTTATATCCACGTCGTTAACAATGATTTCACCCAGTGGCAGATGTATGCCATCGGCGGTAGCGCTAACCCCACCATCAACAGCCAGGGCAACCGCTACACTGCTCCCTCCGACCCTGATGCCAAAGAGGTCACCAAGCGCGTGGACACCGACGACAGAGAGTGGAGTGGGTGGAATTGGAGAACAGAAGGGGACATAATGGTAAATGGAGCTTTCTTTGTGCCATCTGGTGCCGCCTTCAGTGCTCAGTACGCAGAGGCCACCAGTGTGCAACCCAAATCTGCTGTGCAAATTGACCACCTCACAATGTACTCCGGTGTCTTCGGTGATCCCAGGGATAATGGAGATTTATATCCGGGTTTCAACGGTGGTGGGACCGTGACAGGAGCCACCAACAAAGGCAACAATGCGGGGTCCACTGACGATGGGGACTTCTTCGGGATGGTATTCAGAGGTAGCAGCAGCCAAGCCGCGCCACCATCACTCCCTTCGTCCATTGCATTTGTTTCAACCTTTTTGTCACTTTTCATTATTTTTATTTTGGACATTACCACCAACCATGCCATTCTATTATCATTACTATGATCACACAATTGGGACTGGGGAAACAATTCCTACCAAAAGGATAAAGAATGATCAAAGTTTCTAAAATTTGTTTTTCAATGTAGAAACTAGGAATCATATATATATTTAGGTGCTTCAAAGTTATCAATACATCTAGGTGCAGTATGATTTCTCATTGTCTCAAATGTATAGTTTAATGTATTGAATTCAGTTTGCTTCCTTTTAATCTGCCTTCATATCAATTATAGGCGCCAACTTACTTTCTAAAATGTTTAAATGATCAGCACAGCCTTAGCCTCAGCCTCATGGAAAAAA 1990 0.4925 MVGMWCILLMCLMSSFSPPIKAVLNRSLSLPHPEYVVQELQRKVNASVGRRREMLSKEQDTCLTGNPIDDCWRCEPNWAANRQKLAECSVGFGKDAMGGKGGQIYMVTDSSDRDPANPVPGTLRHAVIQDEPLWIVFAADMTINLKHELIFNSYKTVDGRGANVHVTGHGCITLQYVSNIIIHNIHVHHCRPSGNTMIRASPTRVGLRGKSDGDGISIFGSRKIWIDHCSLSYCADGLIDAIMGSTGITISNNHFAHHDEVMLLGHDDKYLPDRGMQVTIAFNHFGEGLVQRMPRCRLGYIHVVNNDFTQWQMYAIGGSANPTINSQGNRYTAPSDPDAKEVTKRVDTDDREWSGWNWRTEGDIMVNGAFFVPSGAAFSAQYAEATSVQPKSAVQIDHLTMYSGVFGDPRDNGDLYPGFNGGGTVTGATNKGNNAGSTDDGDFFGMVFRGSSSQAAPPSLPSSIAFVSTFLSLFIIFILDITTNHAILLSLL 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g00568 492 SUPERFAMILY Pectin lyase-like 66 380 IPR011050 -
Pste4g00568 492 FunFam Pectate lyase 65 407 - -
Pste4g00568 492 Gene3D - 65 407 IPR012334 -
Pste4g00568 492 PANTHER PECTATE LYASE 18-RELATED 30 406 IPR045032 GO:0030570
Pste4g00568 492 PRINTS Pollen allergen Amb family signature 292 311 IPR018082 -
Pste4g00568 492 PRINTS Pollen allergen Amb family signature 314 333 IPR018082 -
Pste4g00568 492 PRINTS Pollen allergen Amb family signature 356 380 IPR018082 -
Pste4g00568 492 PRINTS Pollen allergen Amb family signature 385 408 IPR018082 -
Pste4g00568 492 PRINTS Pollen allergen Amb family signature 112 137 IPR018082 -
Pste4g00568 492 PRINTS Pollen allergen Amb family signature 148 164 IPR018082 -
Pste4g00568 492 PRINTS Pollen allergen Amb family signature 212 233 IPR018082 -
Pste4g00568 492 PRINTS Pollen allergen Amb family signature 88 105 IPR018082 -
Pste4g00568 492 Pfam Pectate lyase 147 329 IPR002022 -
Pste4g00568 492 SMART amb_all 140 337 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g00568 Pste-Chr4 4343012 4347016 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g00568 6 479 Polysaccharide Lyase AT3G53190 61.680 0.0 573
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste4g00568 4 4343012 4347016 Pste4g00568 4 4343012 4347016 ECH