Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g00562 GCCAAACCTGACAACATTTCTGTTCAGACTTTGCCTTTCCTTTTCTTCCTCTCTTCTACATTTCTGAGCTTCTTGCCTGAATATTCGCTTTTAGTGGCCCTCCCTTGCTTCAATTCACCCATTTCTCTTCTGCTATACTTTTTCATGCATACATAATAACCATTTTGTTAGTGGCAACTTGCAATGGCAATGCCTCCTACTCTAAGAAACAAGCTCAAGACTCTTTGTGTTTCTGCTTGCGCTCATGGCTGGTCTTATGCTATTTTCTGGCGCTTTCATCCACGGAATTCCTTGTTGTTGACTATGGAAGAAGCATACTATGAGGAGCATCTGGGAGAAGAGATTACCAACATGCATCCACAGCTCCACTTGCTGGGCGAAGGAATTGTAGGTGAAGCTGCTTTCACGGGCAAGCACAGTTGGGTGCACTCAGATGGTCAAACTCATGATTGGAATTTGACTGGACAAAATATTTCTGAGGATGATTCTGAACTGCATCAACAGTTCTCCTCTGGGATAAAGACTATTGTGGTCATACCAGTCAAAGCAAGGGGTGTGGTACAGTTTGGCTCCAGAAAGAAGATTATGGAGAGAGTGGAGTTTTTGGAGCAAACACAGAGCGTGCTCATGGAGATAGATGGTGATATGGGTATGATTGACATGTCAGGAAACATGGTTTTACCACAGGATTGTGATAGTAATGATCTGAATGGGTTGCTGGCTTCCATTTCTTCTGCAAGTCCCAATAATCCGTTCCCTTCCCAAAATAAGACTTATGAAGAAGCAATGGCTTCATTGCAAAGAGATTCTTTTTGTCTTGGTGACCAATTGAAAAGTACCACAGAAACTCAAGTTGTATTATCAGATAGGGATAGTGCTGATGTACTTTTGAACCCTAACTCTTCTTCAAACAGCTTTATTGCCAAGAACCCCTGTTTTGGTGCATATGGTGGCGAATTATCTTCTTTTGACTTGTTGGAGCAACAATTGGTATCTGATCTAAGTGCACAAGAAGTTGCAGATGTGTGTTTTACTAATGAAAATGCATTTTCTAATAGCAAACTTCTAGCTCAGGATTCAGCGTTGACATCATCTTGCAGTATGGGGCCTATGGGCAGAGGGTCTTTTAAAGACAAATTACAAAATTCACTGGACAATCAATACTCAACTCAGTCTAGTGTTGTGACAGACGTTGATTTTCCCTCTAGTTCAAATACATTGCATGGACTCTTGGAGAACTTAGAGCCAATTGATATGTCAGAAGAAATTTTGAAGTTCTGCTCCATGGATGATCTTTGCCAGTGGTTTGGCCCTTCTCAAGAGGATAGTATCTGCCAAAAAGTAATTGCATTGGATAACACCTTTTCTGAATCAGTAGAGTTTAATCCCGCTTCCTTTGATCTGGTGGGAAGCAGTGCTTTGAATGATATTTCAGGGACATGTCTAACTGCGCCTAATTCAAACTCAGATGGGAAAGAAACATCTGTGGTTATGCATAGCGCTGAAAAGGTTCTCTTGGATAGCATGGAACTTGATTCGAGCTATGATGGAGCTAATGAATGGTGGGCCAATACGCATACACCTATGGTGAGTGGTGTTACTGATGCTGGCTTCTCTGAATGCATTTCAGAGTTGAATACTGATATTCTGACTGGCACCCGGAAGAGATTATTCTCAGAGTTAGGAATCGAAGAGCTTTTGAGGGGTGGAGCAAATTACAATTCTTTTAATAGTTCTTCTGAATTTGAGTATGAATTAACACCCAATAAGAGCCAGACTGTAGAATCTTCATCAACGAATAGAAATCCAATATATCTCACCAACCTTCATAGACCTGGGGCTAGAGGAGACTTGTTGCAGCAGCCCCTTTGTGACTTAAACAACACAAACCATCTTCCAAGCAAGAAAGATACATTCCCAAAATTACAAGCAGGCACGTGGATTGATGATAGCCTTAGCATTAATATTGGGAGGGATGCTCTGCTACACCCTCAAAAGCCCGAGGAACCAGCAAAGCCCTCCAAGAAGAGAGCTAGGCCAGGGGAGAGTACTCGACCACGGCCCAAAGATCGTCAGCAGATCCAAGACTGTATCAAAGAGTTGAGAGGAATCATCCCCAATGGTGGAAAGTGTAGCATTGACTCTTTGTTAGACCGCACCATCAGATACATGCTTTTCTTACAAAGTGTCCTCAAGTATTCGGACAGGCTACACGAACCAAATGAGCCAAAGCTTATTGAACAGGAAAATGAAGTGGTTCTAAAAGACAGTGGCATGGCGGATATTAAAAACTGTGGTATTACGTGGGCATATGAAGTGGCACACCAAACAATGCTATGCCCAATTATAGTCGAGGACATGAGTCTACCTGGCCAAATGCTTATAGAGATGCTTTGTGAGGAGCAGGGTTTCTTCCTTGAGATAATTGACATAATTCGGGGTTTTGGACTGAGTATCTTGAAAGCCAAGATGGAAAGGAAGAAGAAGAAACTATGGGCACGCTTTATTGTTGAGGCAAACAGACATGTGACAAGGATAGATGTGTTTTGGTCCCTAATCCATCTTCTACAGAAAACAGACACCTCTGGCACTGATTCTTCTAATAAGAATTGCGATGTTATTGAAGCCAATATTTAGGGAAGAGGATTACCAAGTAGCAACCCATTTCCGCGGGTCCAAGAAATAGGATCAAGGTGTACATAGAGGATAGATTAGGATACACTTAGCAAAAACTGTAGTTGATCTTTGCCCAACTTAGTTCCCTAGGAAGAGGCTGTCCAAGATGCATTGAAATGTGAGTTGCAAAATTATGTATAATGAACTTGCTGAGCATGCAGGAGGTGGTAAAACTGCCTGTAAGACATGTTAATGAAGTGACCACGATAATTCAGTTGCTCGAAGCATTAATTCCTCCTGTATTCACGTTGTCTCATTATATAATTAATGCATGAAAATAACGTTAAGACTGTCTCGAC 2975 0.4175 MAMPPTLRNKLKTLCVSACAHGWSYAIFWRFHPRNSLLLTMEEAYYEEHLGEEITNMHPQLHLLGEGIVGEAAFTGKHSWVHSDGQTHDWNLTGQNISEDDSELHQQFSSGIKTIVVIPVKARGVVQFGSRKKIMERVEFLEQTQSVLMEIDGDMGMIDMSGNMVLPQDCDSNDLNGLLASISSASPNNPFPSQNKTYEEAMASLQRDSFCLGDQLKSTTETQVVLSDRDSADVLLNPNSSSNSFIAKNPCFGAYGGELSSFDLLEQQLVSDLSAQEVADVCFTNENAFSNSKLLAQDSALTSSCSMGPMGRGSFKDKLQNSLDNQYSTQSSVVTDVDFPSSSNTLHGLLENLEPIDMSEEILKFCSMDDLCQWFGPSQEDSICQKVIALDNTFSESVEFNPASFDLVGSSALNDISGTCLTAPNSNSDGKETSVVMHSAEKVLLDSMELDSSYDGANEWWANTHTPMVSGVTDAGFSECISELNTDILTGTRKRLFSELGIEELLRGGANYNSFNSSSEFEYELTPNKSQTVESSSTNRNPIYLTNLHRPGARGDLLQQPLCDLNNTNHLPSKKDTFPKLQAGTWIDDSLSINIGRDALLHPQKPEEPAKPSKKRARPGESTRPRPKDRQQIQDCIKELRGIIPNGGKCSIDSLLDRTIRYMLFLQSVLKYSDRLHEPNEPKLIEQENEVVLKDSGMADIKNCGITWAYEVAHQTMLCPIIVEDMSLPGQMLIEMLCEEQGFFLEIIDIIRGFGLSILKAKMERKKKKLWARFIVEANRHVTRIDVFWSLIHLLQKTDTSGTDSSNKNCDVIEANI 817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g00562 817 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 617 666 IPR011598 GO:0046983
Pste4g00562 817 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 54 147 IPR025610 -
Pste4g00562 817 PANTHER TRANSCRIPTION FACTOR BHLH155-LIKE ISOFORM X1-RELATED 3 810 IPR043561 GO:0003700|GO:0006355
Pste4g00562 817 MobiDBLite consensus disorder prediction 602 632 - -
Pste4g00562 817 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 630 673 IPR036638 GO:0046983
Pste4g00562 817 MobiDBLite consensus disorder prediction 527 545 - -
Pste4g00562 817 MobiDBLite consensus disorder prediction 527 548 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g00562 Pste-Chr4 4303338 4308400 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g00562 582 805 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G27230 48.230 1.16e-61 218