Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g00557 AGAAAAGGTGATCCATTCCTTCATATACACCGTCCCACACTCGGCCACAGCTCTCTCACATTCCCTTTTTCTGCTTCTTCAACTAAATTACAAAACCTACCCTCATTCCTCATTGTTTCAACTTCATTTCACTTCAGCCTCCCTTCCATCTCTTCATCTTCTTCCATGGACACAGCTCAGTGGCCACAGGAGATGGTGGTGAAACCAATAGAAGATATAGTAGTGACAAATACATGTCCAAAGGGTGGAGGTGTGGTGGAAAGGAAGCCAAGACCACAGAAAGAACAAGCTCTTAACTGTCCAAGGTGTCATTCAATTAACACCAAATTCTGCTACTACAATAACTATAGCCTCACACAGCCTCGCTATTTTTGCAAGACTTGTAGAAGGTACTGGACTGAAGGTGGATCCCTCAGAAACATCCCTGTAGGAGGTGGCTCAAGGAAGAACAAGAGATCTTCTGCTTCTTGTTCCGCACCTACTAATACTCATAATATTAATAATATTATTAATAATTCTACTAATAAGAAGCTTCCTGATCTGGTTATCACACCTCCATCTTTGTCACACACTGATCAAAACCCTAAGAGTGATGATGATATTCATCAAGGGCAAGATCTCAATTTGGCTTTCCCATCCACCACCCCAGATTTCAGAAACATCTCTGAATTGGTTCTACAAAACAACAACAATAGCAGCAACAACAGCATGTCAGCTTCAGCTTCTTCTTCTTCAACCACCACCACCACCACCACCACAACTTCCACTTCTCACCTTTCTGCATTGGAACTTCTTACTGGGATCGCTTCAACTTCCACTGGGTTGACTTCTTTCATGCCTTTGCCAGTTCCAGCTGATCCAAATTCTGTCTACACATGTGGATTTCCTCTGCAAGATTTCAAGCCAACCTTGAATTTCTCTTTAGATGGGATTGGAAACGGGTTCACAGGCCTTCACAATGTTCAAAGTGGGAGGCTTTTGTTTCCATTTCAGGACCTAAAACAGGTTTCTACTACTACCACCACAATGGATCAGAAGCAACAAGGAGATTCAACTGGGTATTGGACTGGAATGTTAGGCAGAGGATCATGGTAATTAATCAAGAGAGTCACATTAATATATTTATTTACTTTATTCTCTTGCTTTCTACTAAGTTAATTTTCCCTTCAACTTTTTTTGGATTTTGATGAGTTTCCTTCAGATCTTGTGGGGACTTCACTTGTTTGGATTTCTTCATAACTGGCTAACAGCTGATAGGATCGATTCATACATATATTTCTTTTCCTCTTCTGTCAATTTCTTATGTATCTAGCTCCTCTCATTATATCTCTTCATGACCAAGATGCGATCTTGAATTGAAGCTTATTTTAGGCAGGCTTCAGTGCTATTCGGAAGTTAAACATTAAATTTGATTATATGTAAAGACAGAAGAGATCAAGATTAATCCCATTTTTTTAGGGTTAACAAGTAGCTAGAAAGAGGGGCCGGGCAAAGGAAGTGGTGGTCTTTTGATATTTCATGCATGTAATTTCTTCTATATCACAGAACCAGGGCAACATCAACAATTGGTTTGATTGTCTAGGTTACCGGATTCGAAGAATGTATAATGTACGTAAATGAATATTATATATTACAAAATTGGTCTGTTATGTTTATGACTTATGAATGTCAAATTTGTAAATATTTGGCTGTGATTATCTATATGATGGTTTAATACA 1718 0.3894 RKGDPFLHIHRPTLGHSSLTFPFSASSTKLQNLPSFLIVSTSFHFSLPSISSSSSMDTAQWPQEMVVKPIEDIVVTNTCPKGGGVVERKPRPQKEQALNCPRCHSINTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGGSRKNKRSSASCSAPTNTHNINNIINNSTNKKLPDLVITPPSLSHTDQNPKSDDDIHQGQDLNLAFPSTTPDFRNISELVLQNNNNSSNNSMSASASSSSTTTTTTTTTSTSHLSALELLTGIASTSTGLTSFMPLPVPADPNSVYTCGFPLQDFKPTLNFSLDGIGNGFTGLHNVQSGRLLFPFQDLKQVSTTTTTMDQKQQGDSTGYWTGMLGRGSW 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g00557 364 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 87 248 IPR045174 GO:0003700|GO:0006355
Pste4g00557 364 ProSitePatterns Zinc finger Dof-type signature. 100 136 IPR003851 GO:0003677|GO:0006355
Pste4g00557 364 MobiDBLite consensus disorder prediction 147 192 - -
Pste4g00557 364 MobiDBLite consensus disorder prediction 229 255 - -
Pste4g00557 364 MobiDBLite consensus disorder prediction 142 213 - -
Pste4g00557 364 ProSiteProfiles Zinc finger Dof-type profile. 98 152 IPR003851 GO:0003677|GO:0006355
Pste4g00557 364 Pfam Dof domain, zinc finger 96 152 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g00557 Pste-Chr4 4254492 4256532 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g00557 56 364 C2C2-Dof Transcription Factor Family AT4G24060 44.290 1.78e-63 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pste4g00557 zf-Dof 5e-33 No_clan