Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g00554 CTATAAATGAAGCGCGTTTGTTTTCTTAAATCTCTCACCAAACGCAGAAGAAAAAACAAACAAAGTATTGGAACACGAAACACAACCATCTTAACTCTTAACAATTAAGCGCCACCTCGTTCATTGTTTTCAATTGAACGGAGAAAACGACAGAGAAGATGTTTCAGGAGAGCAGCGGGACGCGGTGGCCGACTCAGTGGACTCGGTACCACGACAAGCTCTTCGAGCGGGCTCTGCTGGTGGTGCCGGAGGACCTGCCGGACCGCTGGGAGAAGATCGCCGATCAGGTTCCCGGAAAGTCGGCGGCGGAGGTGAGGGAACACTACGAGGCTCTCGTTCACGACGTCTTCGAGATCGACTCCGGCCGAGTTGAGGTACCTTGTTACGTTGATGACTCGGCGGCGCCGCCTCCCACTGGCGGTGCTGGGTTGTCCACGTGGGACTCTGCTAATCAGATCTCATTCGGGTCCAAACCTAGGCAAGGCGATAACGAACGGAAGAAGGGCACGCCTTGGACTGAAGAGGAGCACAGGCTGTTTCTGATCGGGTTGAGTAAATTTGGAAAGGGAGATTGGAGAAGTATTTCCAGAAATGTTGTTGTGACAAGAACACCAACTCAAGTAGCTAGCCATGCTCAGAAGTACTTCCTTCGTCAGAATTCGGTGAAGAAAGAGAGGAAAAGATCTAGCATCCATGACATAACAACAGTGGACAGCAACTCTGTGCCCGTTCCCATTGATCAGAATTGGGTTCCTCCTCCTGGTGGTTCAGTGCAGCAGTACCCATCAACCAACATGCATGATCAAATTCAAATGGGTAGATTTGGGTATTCTAACTATGGCTTTGAAATGTAGAGAATGATACAAGCCGTATGTACTGTATATAGTGCTCTAGCTGTGAATGTGATTCAATATGTACTCTTTGTAAAGTTTTATGGTTTTGCTAGCTGACAAGGGTGATTAGGAGTATTGCTAATTATTGAATTTATTAGTGTAGGTTTTGTTTAGATACCGCCCTATTAGTGAACAAGTGAGGGTGAAAAGGTAGTAAATACAAATAGTGAACCTTTAGGAATGAATTCTACAGTAATGGAAATTCTTTGTGTGTGTCTAATTCAATTACTGCTTTGCAATTCGGATTTAAGTATTGTACCATAAACCGTGGTCATTTGTCGAGTG 1178 0.4567 MFQESSGTRWPTQWTRYHDKLFERALLVVPEDLPDRWEKIADQVPGKSAAEVREHYEALVHDVFEIDSGRVEVPCYVDDSAAPPPTGGAGLSTWDSANQISFGSKPRQGDNERKKGTPWTEEEHRLFLIGLSKFGKGDWRSISRNVVVTRTPTQVASHAQKYFLRQNSVKKERKRSSIHDITTVDSNSVPVPIDQNWVPPPGGSVQQYPSTNMHDQIQMGRFGYSNYGFEM 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g00554 231 SMART sant 10 62 IPR001005 -
Pste4g00554 231 SMART sant 115 165 IPR001005 -
Pste4g00554 231 CDD SANT 14 60 IPR001005 -
Pste4g00554 231 MobiDBLite consensus disorder prediction 91 106 - -
Pste4g00554 231 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 111 167 IPR017930 -
Pste4g00554 231 FunFam Transcription factor SRM1 6 73 - -
Pste4g00554 231 SUPERFAMILY Homeodomain-like 12 68 IPR009057 -
Pste4g00554 231 ProSiteProfiles Myb-like domain profile. 14 60 IPR001005 -
Pste4g00554 231 Pfam Myb-like DNA-binding domain 118 163 IPR001005 -
Pste4g00554 231 CDD SANT 118 163 IPR001005 -
Pste4g00554 231 MobiDBLite consensus disorder prediction 79 118 - -
Pste4g00554 231 FunFam transcription factor MYB1R1 117 168 - -
Pste4g00554 231 Gene3D - 117 169 - -
Pste4g00554 231 ProSiteProfiles Myb-like domain profile. 111 163 IPR001005 -
Pste4g00554 231 NCBIfam myb-like DNA-binding domain, SHAQKYF class 114 166 IPR006447 GO:0003677
Pste4g00554 231 SUPERFAMILY Homeodomain-like 113 168 IPR009057 -
Pste4g00554 231 ProSiteProfiles SANT domain profile. 114 167 IPR017884 -
Pste4g00554 231 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 12 215 IPR043363 -
Pste4g00554 231 Gene3D - 7 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g00554 Pste-Chr4 4209187 4211079 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pste4g00554 Myb_DNA-binding 4.1e-11 CL0123