Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g00543 ATGGCTACTCGAAGATATGAGTTTGGAAGGATGGATGAGGCTAGCCACCCAGATTCCATGAGAGCCGCTTTGGCTGAATTTGTCTCCACTTTAGTCTTTGTCTTTGTTGGAGAAGGCTCTGCCCTTGCTTTGCGACAAATTTACAGGGAACCGGGGTTATCAGCGGGTGAGCTAGTTGTGATTGCATTAGCTCATGCCTTCGCTCTCTTTGCTGCTATTTCTGCTTCCATGCATGTCTCTGGTGGACACGTCAACCCTGCCGTCACTTTTGGTGCTCTTCTTGGGGGAAGGATCTCCCTTCTTAGAGCCATTTACTATTGGCTTGCTCAACTTCTAGGTTCTATCGTGTCTGCCCTCTTGTTGAGGCTTGTCACCAACAACATGAGACCACAAGGGTTCAGTGTGACAATCGGCGTTGGAGCGTTTCACGGTCTTGTACTAGAGATTGCACTCACATTTGGGCTGATGTACACAGTGTATGCTACAGCTATTGATCCTAAAAGGTCTAGCGCCAACAATGCTGTTGCACCCTTAGCCATTGGATTTGTTGTTGGGGCAAACGTCCTGGCTGGTGGCCCGTTTGATGGAGCATGCATGAACCCTGCTCGGGCTTTTGGGCCTTCCTTAGTGGGCTGGAGATGGGACTACCACTGGATCTTCTGGGTGGGCCCATTGATTGGGGCTGCTCTGGCTGCACTTCTGTATGAATACGTTATGGTCCCAATTGAGCCTCCTCCTCATCACCAACCTTTGGCTGCTGAAGATTACTAG 771 0.5006 MATRRYEFGRMDEASHPDSMRAALAEFVSTLVFVFVGEGSALALRQIYREPGLSAGELVVIALAHAFALFAAISASMHVSGGHVNPAVTFGALLGGRISLLRAIYYWLAQLLGSIVSALLLRLVTNNMRPQGFSVTIGVGAFHGLVLEIALTFGLMYTVYATAIDPKRSSANNAVAPLAIGFVVGANVLAGGPFDGACMNPARAFGPSLVGWRWDYHWIFWVGPLIGAALAALLYEYVMVPIEPPPHHQPLAAEDY 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g00543 256 ProSitePatterns MIP family signature. 83 91 IPR022357 -
Pste4g00543 256 NCBIfam MIP family channel protein 25 235 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pste4g00543 256 Pfam Major intrinsic protein 14 235 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pste4g00543 256 PRINTS Major intrinsic protein family signature 181 203 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pste4g00543 256 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pste4g00543 256 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pste4g00543 256 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pste4g00543 256 PRINTS Major intrinsic protein family signature 147 165 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pste4g00543 256 PRINTS Major intrinsic protein family signature 218 238 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pste4g00543 256 PANTHER AQUAPORIN-8 7 241 IPR034294 -
Pste4g00543 256 Gene3D Glycerol uptake facilitator protein. 5 243 IPR023271 -
Pste4g00543 256 SUPERFAMILY Aquaporin-like 13 247 IPR023271 -
Pste4g00543 256 CDD MIP 21 238 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pste4g00543 256 FunFam Probable aquaporin TIP1-1 4 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g00543 Pste-Chr4 4115458 4116507 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g00543 2 256 Major Intrinsic Protein MIP AT1G73190 66.792 6.39e-115 328