Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g00542 CGTTAATTTTCCTAAGGGAATGGAAATGAAGAGTGTGGCTAGTTGGAAGTGGAATGGAGTTGAGAAAAAAAGGCGGAAAGGAAGCAGAATGGGATCGAAAATTGTTCCGAAATGGGCATCGAAGCCTTGCGTGATGGGAATCGACGAAGCTGGAAGAGGCCCCGTTTTAGGGCCTATGGTATACGGTTGCTTATACTGCGCTCACTCCTATTTGAAGACCCTACCCACTTTGAGTTTTGCAGATTCCAAGACGCTCAAAGAAGACAAGAGGGAAGAATTGTTTGAAGCTTTGAAGGCCAATGATTCTATTGGATGGGATGTTGATGTCATTGACCCACGTGAACTCTCTGCTAAAATGCTCAAAAAGAATAAAATAAACTTGAACGACATTTCACATAACTCTGCCATGGGCCTCATTGATAGGGTACTAAACATGGGAGTTCTTCTAACTGAGGTTTATGTAGATACAGTTGGAGATGCAGGGAAATATGAAATGAAGCTGTCTAATACTTTTCCATCTATCAAATTTGTGGTTGCAAAGAAGGCTGATAGTCTTTACCCTGTTGTTAGTGGTGCAAGTATAGTTGCAAAGGTCACAAGGGACCGTGCTTTAAGAGACTGGGTGCTTGATGAGACCGCTGAAAACATGCAGAGGAACTTTGGCTCTGGGTATCCTGGAGATCCCCAAACGAAGTCTTGGCTAGAAGAACACAAACATCATATCTTTGGATTTCCAACATTGGTCCGATTTAGTTGGGGAACCTGCAACTCTTATTTTAAAGATATCGCTGAGGTGTTATGGGAGTCTAACAGTTTGGATGAAGATGGTGGTGGTAGCAATAATAGTAATGGCAAGCGACAATTGAAATTAAGCAATGTGGGTTTCACCACATCCAAGACGAGAAGTGAAGAAATAGAATCAAGTGGTAAAGGACGCTGTAGGTTCTTTCAGGCTCGGAAACTTGAGCAACTCACTTATTTCTAAAAGTGGTGCTTAAGTATTGCCCCCTTTATTTGACTTACTTCAGTAATTTCCAGCCATGTGAAATTTTATATTATTCGAATTTCATTCTTGGATAACATTTTCTTTATATACACTTTCTTGGATAATACTCAATCTAACAAGATGTGTACCGAGTATTGTGTCAATATGATTTAAAATGTCCTCTATTCAGCTCTCCCAAACAATTTCTTGGATGTCTGAATGGAGTAGCTGAATTACTTAGTGTTTCCAGGTTTGAATCTGAAATTGAGGAGCAAGATACTAGTTCTCCTCAACAGGTTGCACACAAAATTTATCGGCAGTTTAAAGTCTGG 1317 0.4032 MEMKSVASWKWNGVEKKRRKGSRMGSKIVPKWASKPCVMGIDEAGRGPVLGPMVYGCLYCAHSYLKTLPTLSFADSKTLKEDKREELFEALKANDSIGWDVDVIDPRELSAKMLKKNKINLNDISHNSAMGLIDRVLNMGVLLTEVYVDTVGDAGKYEMKLSNTFPSIKFVVAKKADSLYPVVSGASIVAKVTRDRALRDWVLDETAENMQRNFGSGYPGDPQTKSWLEEHKHHIFGFPTLVRFSWGTCNSYFKDIAEVLWESNSLDEDGGGSNNSNGKRQLKLSNVGFTTSKTRSEEIESSGKGRCRFFQARKLEQLTYF 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g00542 321 NCBIfam ribonuclease HII 38 250 IPR004649 GO:0004523|GO:0016070
Pste4g00542 321 FunFam Ribonuclease 15 208 - -
Pste4g00542 321 Gene3D Ribonuclease hii. Domain 2 209 258 IPR023160 GO:0004523
Pste4g00542 321 ProSiteProfiles Ribonuclease (RNase) H type-2 domain profile. 36 258 IPR024567 GO:0004523
Pste4g00542 321 CDD RNase_HII_eukaryota_like 39 255 - -
Pste4g00542 321 Gene3D - 8 208 IPR036397 GO:0003676
Pste4g00542 321 SUPERFAMILY Ribonuclease H-like 37 254 IPR012337 -
Pste4g00542 321 FunFam Ribonuclease 210 257 - -
Pste4g00542 321 PANTHER RIBONUCLEASE H2 SUBUNIT A 25 308 IPR001352 GO:0003723|GO:0004523
Pste4g00542 321 Pfam Ribonuclease HII 39 249 IPR024567 GO:0004523
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g00542 28 321 Core DNA Replication Machinery Family AT2G25100 65.306 1.50e-143 404
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste4g00542 4 4111662 4114877 Pste4g00542 4 4111662 4114877 ECH