Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g00512 ATGGCAGAAGAAGAAGAGCAGTTGCAACAACTCAGAGCGAAAGCCACAGAGCTTTTCATCAGAGAAGAATGGAACGCCTCAATCGAAGCCTATTCCCACTTCATCACCCTCTGCACCCAAAAACTCTTCCATTCTCACCCAAACCAAAAGCTTCGCAGATCCCTCTGCATAGCCTTATGCAACCGCGCAGAAGCAAGGTCCAAATTGAAAGACTTCCACTCTGCCCTTCAAGATTGTAACCACGCTTTGGAACTCGACAACACACATTCCAAAACCCTTTTGTGCAAAGGGAAGATCTTGCTCTGTCTCAACCGTTATTCTTCTGCTCTTGAGTGTTTCAGAGCGCTTGATGGAAACACTGAAAGCGTAAGTGGTTACTTAGAGAGGTGCAAAACTTTGGAGCTTTTGTCCAAGACGGGGTGTTTGGATCTGTCAGATTGGGTTTCAAATGGGTTTCGTGGCAAGGTTCCGGAGCTTGCAGAACACATTGGTCCTGTGGAGATCAGAAAATCTGAAATCAGTGGAAGAGGATTGTTTGTCACAAAGAATATTGATGCTGGGTCGTTGATGTTGGTTACCAAAGCAATTGCCATGGAGAGGAGTATCATAATGGGAGGGGTTCAGGATCTGAGTGAGGATGCACAGTTGGCAATGTGGAAGAATTTCATTGACAAGGTTTTTGAGTTTGTTGGCAAGTGTCCCAAGACAAGGGGTTTGATCAATAGGTTGTCTTGTGGTGAAAACGAGGATGAACTTGAGGTGCCTGATGTGGGTCTCTTTAGGCCCGAGAGTGAGTGTGTGGGGAAGGATGTTGAAGTTGAGGTTGCTGTTGAGATGGTTAAGTTGGTTGGTACATTGGATGCGAATTCTCTCACTGAAGATGCTGTTTCAGCCAATGTAATGAGGAGGGGTAATGATTGCTATGGTGTTGGGTTGTGGTTGCTCCCTTCCTTCATAAACCACTCTTGTATTCCCAATGCAAGGAGGTTGCATGTTGGGGACTACTTGGTGGTTCATGCTTCTAAGGATTTGAAGGCTGGAGAGGAGATCACTTTTGCTTATTTTGACCCTTTGTGTGGTTTGAGCAAGAGGAAAGAGATGTCAGTGAATTGGGGGATTCATTGCAAGTGCAAGAGGTGTAGGTTTGAAGGAGAAGTGTTCTCCAAACAGGAAATAAGAGAGATTGAGATTGGTCTTGAGAGAGGAATGGATGTGGGGGGTGTGGTGTACAAGTTGGAGGAGCAAATGAAGAGGTTCAAGGTTAGGGTAAAGGAGAAAGGGTATTTGAGAGCATCATTTTGGGAAGCATATTCTCAGGCTTATAGGTCTGAGAGGGCTATGAAGAGGTGGGGAAGAAGGATTCCTACTCTGGAAGTTGTGGTTGACAGCGTTACTGATGTGGTGGGAGGGGATCACAGGTTGCTTAAGATGATGATGGTGGAAGAGTTGAAGAAAAATAGTGGTGGAGTTGTGGAGAAGGACAAAGTTTTCAAGATGGCAAGAGAAGTATTTGGAAAGGTAGTGAAAAAGCAAGCAATGAAGACACTTCTTGAACTCTGCATTGGTGATTGA 1572 0.4517 MAEEEEQLQQLRAKATELFIREEWNASIEAYSHFITLCTQKLFHSHPNQKLRRSLCIALCNRAEARSKLKDFHSALQDCNHALELDNTHSKTLLCKGKILLCLNRYSSALECFRALDGNTESVSGYLERCKTLELLSKTGCLDLSDWVSNGFRGKVPELAEHIGPVEIRKSEISGRGLFVTKNIDAGSLMLVTKAIAMERSIIMGGVQDLSEDAQLAMWKNFIDKVFEFVGKCPKTRGLINRLSCGENEDELEVPDVGLFRPESECVGKDVEVEVAVEMVKLVGTLDANSLTEDAVSANVMRRGNDCYGVGLWLLPSFINHSCIPNARRLHVGDYLVVHASKDLKAGEEITFAYFDPLCGLSKRKEMSVNWGIHCKCKRCRFEGEVFSKQEIREIEIGLERGMDVGGVVYKLEEQMKRFKVRVKEKGYLRASFWEAYSQAYRSERAMKRWGRRIPTLEVVVDSVTDVVGGDHRLLKMMMVEELKKNSGGVVEKDKVFKMAREVFGKVVKKQAMKTLLELCIGD 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g00512 523 Coils Coil 1 21 - -
Pste4g00512 523 Gene3D SET domain 264 384 IPR046341 -
Pste4g00512 523 Pfam SET domain 175 354 IPR001214 GO:0005515
Pste4g00512 523 SMART set_7 164 361 IPR001214 GO:0005515
Pste4g00512 523 SUPERFAMILY TPR-like 7 134 IPR011990 GO:0005515
Pste4g00512 523 Gene3D Tetratricopeptide repeat domain 2 138 IPR011990 GO:0005515
Pste4g00512 523 CDD SET_SMYD 304 380 - -
Pste4g00512 523 SMART tpr_5 90 120 IPR019734 GO:0005515
Pste4g00512 523 SMART tpr_5 56 89 IPR019734 GO:0005515
Pste4g00512 523 PANTHER TPR DOMAIN PROTEIN (AFU_ORTHOLOGUE AFUA_5G12710) 4 509 - -
Pste4g00512 523 SUPERFAMILY SET domain 165 380 IPR046341 -
Pste4g00512 523 ProSiteProfiles SET domain profile. 164 355 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g00512 Pste-Chr4 3865269 3866840 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Pste4g00512 SET 1.4e-11 No_clan