Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g00491 ATGGAGTATAGCCATTTTCATTCTGACAAAAGGGTAGAGAAAAAGATAATAAGGTACAAGGAATGTCTGAAGAACCATGCAGCTGCAATTGGTGGCAATACAACTGATGGGTGTGGCGAGTTCATGGCTGCAGGAGAAGAAGGCACCCTTGAGGCTCTCAAGTGCTCAGTTTGCAACTGCCACAGAAACTTTCACAGAAAGGAGATAGAGTCATCTGATTCTAATTCCACTCCTCTGATGATTATCCCTGATAGTACTACTCAGATAAGGCACATTCTGGCTCATTTATCTCCCAACAAAAGTGGCTCAATTAGTCCTTCTGACGTGTCTGATGAGAAGGACTGTGAAGATAGGATGATTAAGGAAGTGAAAAATTCAACTGAAAAGGTGAAGAAGAGATTCAGAACCAAGTTCACACAAGAGCAGAAAGAAAAGATGTTGACCTTTGCAGAAAGAGCAGGATGGAAGATACAGAAGCTAGATGAATCTGTAGTGCAGAAGTTTTGCCAAGAGATTGGAATAAAGAGAAGAGTCCTCAAAGTGTGGATGCACAATAACAAGAACACTTTTGGCAAGAGAAATCCCTCCACTAGCTAG 597 0.4171 MEYSHFHSDKRVEKKIIRYKECLKNHAAAIGGNTTDGCGEFMAAGEEGTLEALKCSVCNCHRNFHRKEIESSDSNSTPLMIIPDSTTQIRHILAHLSPNKSGSISPSDVSDEKDCEDRMIKEVKNSTEKVKKRFRTKFTQEQKEKMLTFAERAGWKIQKLDESVVQKFCQEIGIKRRVLKVWMHNNKNTFGKRNPSTS 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g00491 198 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 18 69 IPR006456 -
Pste4g00491 198 SUPERFAMILY Homeodomain-like 127 192 IPR009057 -
Pste4g00491 198 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 13 189 - -
Pste4g00491 198 NCBIfam homeobox domain, ZF-HD class 131 188 IPR006455 -
Pste4g00491 198 Gene3D - 118 191 - -
Pste4g00491 198 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 19 68 IPR006456 -
Pste4g00491 198 Pfam ZF-HD protein dimerisation region 17 69 IPR006456 -
Pste4g00491 198 FunFam Zinc-finger homeodomain protein 2 118 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g00491 Pste-Chr4 3724460 3725056 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g00491 12 194 ZF-HD Transcription Factor Family AT1G14440 51.256 3.41e-65 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Pste4g00491 ZF-HD_dimer 2.2e-28 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste4g00491 4 3724460 3725056 Pste4g00491 4 3724460 3725056 ECH