Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g00488 CAAAAATACTGATCCCAGATTAATCCAACGACGACCATCAAATCTCACCATCCAAACAGAAAACACACTACCAAACCCTAATCTGAAACCATCCTTCCCTCTCTGTCTTCATTTCTCTCTCCACCAACCACCAAACTCCGCTGCCATTTTTCTCTCCTAGCCGCCCGATCCACAACCTTCCCAACCCTCTCCTTCGAGATCTCATCCCACGCGCCTCCAACGCTGGACCACGCGCCTGTTTCCGCCTCCATCATGGTTGTGAGCGGAGGGAAGGGCCTCAAACGCACCGCGAAGAAGAGAGTCACCGCCGATTTCTACGACTTCCTCACGTTCCCCACGCCGTCCCTCGCCGAGGCTGAAAACTTCGCCGGCGGACCCTTCCGATCCAACGTCCACACCTTCCTCTCCAAGCACGCGCTGCTTCCTCCTCCGTACGCACTCTTCCCTCACCTGCTGACCTGGCAGATCCTCTTCCGCGTCGGCGAGCTAACCGATGGCCCCGACTCGCCCGTCGTCTGCCTCGATGTCATCGAGGAGGACGTTGCCAGATCCAGATCTGTTTACTGCGATCAGTGCCGAGTTTTCGGTTGGAGCGGCCACCCAGTGTGCGGGAAACGTTACCATTTTATAATCAAAGCCGATGGGAGCTCCATTGGTGGGTACCACAAGCCGTGTATGTGCTGTGGAGACATCTTGCATTTGTCAGAATCCAAATGCAAGTCTTGCAACCATGTGACTACCACCGATGACGTTGAAGACTGGGTGTACAACCAATTAGAGAATACAACTCATCTTTTACATGGCGTAGTCCATGTCAATGGATATGGGCACCTTCTTCGGGTTAATGGAAGAGAAGGGGGCTCTAGACTTCTTTCTGGTTGTCATATTATGGATTTCTGGGATCGCTTATGCAAGACTCTTGGAGTCAGAAAAGTCAGCGTGATGGATGTTTCAAAGAAATACGGACTAGAATATCGCTTGCTCCACGCCATCACGAAGGGACATCCGTGGTATGGTGATTGGGGTTATAAATTTGGCTCTGGTAGCTATTGTCTCACACATGAATCTTACAAGTCTGCTGTTGAAAGCCTATCCAACCTACCCTTGTCAACCTTTTCCCAGTCCCACTCTCGTGTGCAGGACATGATCAAATTTTACCAGTCTTTATCAGAACACGAGCTTGTAAATATAAGGGACCTCTTCTGTTTCATGATGGGTTCGATCAGTAATGCTCATAAGACAGCATCAAATGTTGATGAGACAACCTGCAAGAAGCGCCGTTTTAATGCTTCTGGACTGTCAATTTCTTGGGATAAGAGTGATATTGAACGTGTGGAGCAAGCCATGGTCAGAGTGCTGCGTGCAGTGTCTGAGTCTAAGTGGGTGAGCTGGCGTGCTCTTAGGGGTGCAGCCTCCAAGGTGGGCTCTCCTGAGCTGCTTGATTATTGCCTTGGAGAACTGGGAGGAAAAATGGTTTATGGTGGAATGGTTGTTAATAGCCAATGCAATCCTCAAACTGGAGTTTATGAGTTCAGACTAGAGGCTGCAACTGGTGCTTGCTATGGAATTTTAGCGAACAATAATTCCTCAGGCTCGAAGTATCCATCAGAAGAAAATCTGCTACAATGCTTGAGATATTTGTACGACTCTTTGCTTCATCCTCAGATGATGGTAAACAATGTTGAAGTAGGGACAAGGAATCTTGCGATAAGCTCAGCTCAGAAGCTTTTTGACTGCAAGCAGTTTGTAAAAGATTTTAGTTCTGAGATGTTGCGACTGTCAGATTTGCCGACGTTCCGTGTCTCATGTCACATTGAACTTGTAGATGACTCTGAAGATTCAGATGCTATAATTCCGCCGGAATTAATTGTTCTGCCCCTGAATGCCACAGTGGCTGAGCTCAAGCATGACGCAGCAAATGCTTTTCAATATGTATATCTAATGTTGAGAAGATTTCAAGTTGATGAGCTAGTTGGCTATAGTGGTGTTGACGAATCCACCCAGGTCAAGCTCTTGTTAGGATCGAAAGATGAAGTGTGTGTCCGAGGAAGATGCAATGGAAAGAATGGGTTGAGCAAGTTTCGGATGGAACGAGGACTTGAGAGGTGGACTGTAGATTGCAGCTGCGGAGCCAAGGATGATGATGGAGAAAGAATGTTGGCGTGTGATACATGTGGAGTGTGGAGACACACAAGGTGTTCTGGCATCCGTGATAGCGATCCAGTTCCAGCACGATTTGTTTGTCTGAAATGCCAAAACTCCGACTTAAAACCCAAATCTAGTGGGCACTGCAAAGATTTGACTGTGACTAACGTTAGAACTAGTGGTAGTTGCTTCGGGAACGGCTTGCCAGTGCCATCTGATGTTATTTAATTTTAAGCATTTGACAAGATCACATGTGTTTGCTTATTTTGGTTTGGCCTGAAAGAACCTGTACATAACACAGATAGGCCTTAGGGATAGGTTCAGGGACGGGGCAGGTATGTCTTGTTCATAATTTCAGGTTCATCTGTTGTTTATTGTGTATATAGTCACTGACGGTAACCATGTGGAGTGGAGGGGGGATAAATGAGAATATTTCGACCTTCT 2589 0.4728 MVVSGGKGLKRTAKKRVTADFYDFLTFPTPSLAEAENFAGGPFRSNVHTFLSKHALLPPPYALFPHLLTWQILFRVGELTDGPDSPVVCLDVIEEDVARSRSVYCDQCRVFGWSGHPVCGKRYHFIIKADGSSIGGYHKPCMCCGDILHLSESKCKSCNHVTTTDDVEDWVYNQLENTTHLLHGVVHVNGYGHLLRVNGREGGSRLLSGCHIMDFWDRLCKTLGVRKVSVMDVSKKYGLEYRLLHAITKGHPWYGDWGYKFGSGSYCLTHESYKSAVESLSNLPLSTFSQSHSRVQDMIKFYQSLSEHELVNIRDLFCFMMGSISNAHKTASNVDETTCKKRRFNASGLSISWDKSDIERVEQAMVRVLRAVSESKWVSWRALRGAASKVGSPELLDYCLGELGGKMVYGGMVVNSQCNPQTGVYEFRLEAATGACYGILANNNSSGSKYPSEENLLQCLRYLYDSLLHPQMMVNNVEVGTRNLAISSAQKLFDCKQFVKDFSSEMLRLSDLPTFRVSCHIELVDDSEDSDAIIPPELIVLPLNATVAELKHDAANAFQYVYLMLRRFQVDELVGYSGVDESTQVKLLLGSKDEVCVRGRCNGKNGLSKFRMERGLERWTVDCSCGAKDDDGERMLACDTCGVWRHTRCSGIRDSDPVPARFVCLKCQNSDLKPKSSGHCKDLTVTNVRTSGSCFGNGLPVPSDVI 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g00488 706 CDD PHD_MMD1_like 622 667 - -
Pste4g00488 706 SMART PHD_3 622 668 IPR001965 -
Pste4g00488 706 Pfam PHD-finger 623 669 IPR019787 -
Pste4g00488 706 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 15 681 - -
Pste4g00488 706 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 608 673 IPR013083 -
Pste4g00488 706 SUPERFAMILY FYVE/PHD zinc finger 611 671 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g00488 Pste-Chr4 3703527 3708217 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g00488 78 667 PHD Transcription Factor Family AT5G22260 30.284 2.09e-87 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pste4g00488 PHD 8.6e-09 CL0390
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste4g00488 4 3703527 3708217 Pste4g00488 4 3703527 3708217 ECH