Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g00462 TTTTGTTTCTTCTTCTTCTTCTGCTTCTCTTCTGTTTCTTCTTCAATCTTGCTCCTGCTCTTGCTTTTAGTCAAAGGAAGTAACCATAGCCACTTTGCTTTTGTGAGCTCAAAGAGGAAGTTCCACTATCATCATCCAGGTGACATGAACATCATGATGCAAAACTTAGTAGAGAGACTAAGACTTCTCGTAGGTTTGAACGGATGGGACTACTGCATCTACTGGAAATTGAGTGAAGACCAAAGGTTTCTTGAGTGGTTGGGATGCTGTTGTGCTGGCACTGAAGCCAATCAAAATCCTGGGGAAGAACATCTTTTCCCTGTCTCTTCATGCAGGGATACCACTTATCCACACCCGAGAACAAAGTCCTGTGATCTTCTTTCCCAGCTTTCCACTTCCATACCCATAGACAATTCTGGGCTTCATGCACAGACCCTGTTAACAAACCAGCCCAATTGGGTGAACTATTCCAATAGCTTAGATCCTAGTAGCATTTTGGAAGAAACAATTGGGACCCAGGTTTTGATTTCAGTGCCAGGTGGACTGGTTGAGCTGTTTGTAACCAAACAAGTAGCTGAAGATGATCAAGTGATAGATTTTGTGACAAGCCAGTGCATTGAAGCGGTGAACCACCCACTGAGCTTCAACATTGACGTAAATTCAATGCAATCAAACCCACTTTTGGGTGATGAAAAGGAAGGGAACAACCAGTTCGAGCCTTCAGAACATGTCATCAGTATGGACCACCAGCGCATTGGTCTGTGCAGTTCTCCGCTGGACTTGATGCAACAGTTCAACTACAACCAGCAGAACAGAATGAAGAGCGATGGCTTCTCGGAAGGTTCATTCCTGCATGAGAAGCAAACGAACCCAGAAGAAGAGGAGCAAGACACCTATCAGAAAAGCCTCATGGGAACGGATCCACAAGCAAAAGAGAAGCAAGAAGAGGAGAAGGAGTTGCTGAAACACGCAGTTGGTAGATCAGATTCAATGTCAGATTGCAGTGACCAGAACGAAGAAGAGGAAGATGGAAAGTATAGGAGGAGGAATGGAAAAGGGAACCAATCGAAGAACCTTGTAGCTGAGAGGAAGAGGAGGAAGAAGCTGAATGACAGGTTATACAACCTTCGTTCTTTGGTTCCAAGGATCTCTAAGCTGGATAGGGCCTCCATTCTGGGAGATGCCATTGAGTTTGTGAAGGATTTGCAGAAGCAAGTGAAAGAGCTCCAAGATGAGCTTGAGGAGAATGCAGACACCGAAAGTAACTGCATCAATGGGAATAATAATAATAATAATCAATATGTAGGTGACGCTGAACAAGGTAAGGCTCAAACTGTGGGGACATCGGAGAATGGCTATGTCTATGTCTCAAAACAAAAGCAGGAAGATGTCATTGACAAGCAGACCCAGCAGATGGAGCCACAGGTGGAAGTGGCTCTCATTGATGGGAATGAGTATTTTGTCAAGGTGTTTTGTGAGCACAGGCCTGGTGGCTTTGTCAAGCTCATGGAAGCCTTTAACACTATCGGCATGGATGTAGTCCATGCCACGGTTACAAGCCACAAGGGCCTCGTTTCCAATGTTTTTAAAGTAGAAAAAAAGGACACTGAAACTGTTGAGGCTGAAGATCTAAGAGACTCACTGCTGGAGCTTACGCGGAACCGTTATAGAGGATGGACTCATGAGATGACACCAACGTCAGAAAATGTTTTGGCCAAGGACCAAATTCAACTCCACAACCACCACATAGGTGCCTACTCACACCAATTTCATACT 1776 0.4476 FCFFFFFCFSSVSSSILLLLLLLVKGSNHSHFAFVSSKRKFHYHHPGDMNIMMQNLVERLRLLVGLNGWDYCIYWKLSEDQRFLEWLGCCCAGTEANQNPGEEHLFPVSSCRDTTYPHPRTKSCDLLSQLSTSIPIDNSGLHAQTLLTNQPNWVNYSNSLDPSSILEETIGTQVLISVPGGLVELFVTKQVAEDDQVIDFVTSQCIEAVNHPLSFNIDVNSMQSNPLLGDEKEGNNQFEPSEHVISMDHQRIGLCSSPLDLMQQFNYNQQNRMKSDGFSEGSFLHEKQTNPEEEEQDTYQKSLMGTDPQAKEKQEEEKELLKHAVGRSDSMSDCSDQNEEEEDGKYRRRNGKGNQSKNLVAERKRRKKLNDRLYNLRSLVPRISKLDRASILGDAIEFVKDLQKQVKELQDELEENADTESNCINGNNNNNNQYVGDAEQGKAQTVGTSENGYVYVSKQKQEDVIDKQTQQMEPQVEVALIDGNEYFVKVFCEHRPGGFVKLMEAFNTIGMDVVHATVTSHKGLVSNVFKVEKKDTETVEAEDLRDSLLELTRNRYRGWTHEMTPTSENVLAKDQIQLHNHHIGAYSHQFHT 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g00462 592 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 261 553 - -
Pste4g00462 592 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 353 402 IPR011598 GO:0046983
Pste4g00462 592 ProSiteProfiles ACT domain profile. 487 559 IPR002912 -
Pste4g00462 592 MobiDBLite consensus disorder prediction 286 300 - -
Pste4g00462 592 Pfam Helix-loop-helix DNA-binding domain 360 403 IPR011598 GO:0046983
Pste4g00462 592 SMART finulus 359 408 IPR011598 GO:0046983
Pste4g00462 592 MobiDBLite consensus disorder prediction 272 364 - -
Pste4g00462 592 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 356 415 IPR036638 GO:0046983
Pste4g00462 592 Gene3D - 338 418 IPR036638 GO:0046983
Pste4g00462 592 CDD ACT_UUR-ACR-like 488 551 - -
Pste4g00462 592 MobiDBLite consensus disorder prediction 308 326 - -
Pste4g00462 592 Coils Coil 392 422 - -
Pste4g00462 592 CDD bHLH_AtAMS_like 356 421 - -
Pste4g00462 592 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 57 203 IPR025610 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g00462 Pste-Chr4 3504579 3507331 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g00462 53 566 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G16910 47.290 5.54e-140 417
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pste4g00462 bHLH-MYC_N 9.2e-19 CL0161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste4g00462 4 3504579 3507331 Pste4g00462 4 3504579 3507331 ECH