Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g00452 TGGAGAATTTATGAACCGGAGTTTGTATTTTTCTCTGTAATTCTATAATTTTTTCTCAAAATTTTGTGTTAATTTCGAAGATTTCTGCGTCCTCTGCAATGGTGCAGATTTGAGCTTACAGCACTGCGATTTTCTCAGAGGCAAAGCTCAAACTGCTCCAATTTCATTTCTGGATTTCATCTTTTCACCATTTGATGCAAAAAAAAATTGTATTTTTGAAGTTTGCCGTGAGATTGTAAATTTTTCCTGCTACCAAATCTGTTTCATCTTGAATAAAGTTAGCATTTACCCCTTTAAAAAAATTCGATTTTTTTTTTGTGTGCATTTTTTGGGTGCGGAAGGCTTTGAATCTTCAATGGGCAGGGTTTAAGTAAAGTTTTGAGGTTTTGGGGTATCTTAGTTTTTAGTTGATTTGCGTAAAAATGGAGGGAAGAGAGAATTTTGGTGTTGTGGTGGGTGATGAAGCCCCAGAGAGCTTCCATGTGGCTCCTAGAATTGAGAACAACTTGGACTTTTCAAGGGCCACTATGCCGGCGCCGTCGCCGTCGCCGGTAACGGAGGGGAAAAAGAAGAGAGGGAGACCGCGGAAGTATGGGCCGGACGGGAAGGTGGCGTTGGGGGCGGCGACGCCGCTTTCGCCGATGCCGATTTCCTCGTCCATTCCGTTGACCGGCGAGTTCTCTGCTTGGAAGAGGGGCAGAGGGAGGCCTGTTGAATCTATCAAGAAGTCATCGTTTAAGTTTGAGGTTGAAAGCCCTGGACCAGGTGATGGAATAGCATACTCAGTTGGTGCCAATTTCACTCCACATGTGCTCACAGTAAATGCTGGCGAGGATGTCACTATGAAGATTATGTCCTTCTCTCAACAAGGATCACGCGCTATATGCATTCTCTCTGCAACTGGGACAATTTCAAATGTTACACTTCGTCAACCATCTTCTTGTGGGGGTACTTTAACGTATGAGGGACGGTTTGAGATTCTTTCTTTGTCTGGTTCCTTCATGCCAACTGAGAATGGAGTTACAAGAAGCAGATCTGGTGGGATGAGTGTCTCTTTGGCTGGTCCAGATGGTCGAGTAATGGGTGGTGGACTTGCTGGTTTGTTAGTAGCTGCAGGTCCAGTGCAGGTTGTGGTGGGCAGTTTCCTTCCTGGTCACCAGTTGGAGCATAAAGCCAAGAAGCAAAGGGTGGAGCATATATCAACTATTAGCCCTACACCAGTTAATCTTATCACTAGCGAGGAATTAAAAGTGAGTTTTGGTGGAGTAAAGCCTATTATGACACCTGCTGCTTTTCAAGAAGAAAATATTGCTTCTTTTAACAATGGTCAAGACTCTAGGAACTCATCTGCTGATGACAAAGATCCTTTACCTGAAAAGGAGTCTCACCTAAGTCAATCAAATGCTGAGGCTGCATGCTAAACATATTCCATGTGAATTATTTAATACTATGCAGAGTCAACCTCATTTAGGCTCACTCATGCTTGACTGACAGCTGACAATTAACTTACAAAGACAACTCTGATGGTCAGATGAGTGTCACACGAAGGTTTTGACTCAATAGTTGCACTCTTTGGTACTAGGTGTTAGTTGGCAAATCTGTTTGTTAGGTTTTCCACGTGTCATTTCTCAAGATGTATCTTTAGTATTGTTTAATCACTATTGTAGCAATTAGATATAGGATATATATGTTGTGCCATTTCCCCCATATTAATATTCTATATGTATGTTAAAAATGTGAGTGTGAGTGTTTCTGAACTGTAACTCTATTATTTGTCGTGAAAGAAATTGCATATCAGCCTCCTAGGCTTACCTTTTG 1818 0.4202 MEGRENFGVVVGDEAPESFHVAPRIENNLDFSRATMPAPSPSPVTEGKKKRGRPRKYGPDGKVALGAATPLSPMPISSSIPLTGEFSAWKRGRGRPVESIKKSSFKFEVESPGPGDGIAYSVGANFTPHVLTVNAGEDVTMKIMSFSQQGSRAICILSATGTISNVTLRQPSSCGGTLTYEGRFEILSLSGSFMPTENGVTRSRSGGMSVSLAGPDGRVMGGGLAGLLVAAGPVQVVVGSFLPGHQLEHKAKKQRVEHISTISPTPVNLITSEELKVSFGGVKPIMTPAAFQEENIASFNNGQDSRNSSADDKDPLPEKESHLSQSNAEAAC 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g00452 332 Pfam Plants and Prokaryotes Conserved (PCC) domain 128 241 IPR005175 -
Pste4g00452 332 SUPERFAMILY AF0104/ALDC/Ptd012-like 125 244 - -
Pste4g00452 332 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 30 312 IPR039605 GO:0003680
Pste4g00452 332 CDD DUF296 127 241 IPR005175 -
Pste4g00452 332 SMART AT_hook_2 48 60 IPR017956 GO:0003677
Pste4g00452 332 SMART AT_hook_2 90 102 IPR017956 GO:0003677
Pste4g00452 332 Gene3D - 128 261 - -
Pste4g00452 332 FunFam AT-hook motif nuclear-localized protein 1-like 128 259 - -
Pste4g00452 332 MobiDBLite consensus disorder prediction 30 62 - -
Pste4g00452 332 MobiDBLite consensus disorder prediction 294 332 - -
Pste4g00452 332 ProSiteProfiles PPC domain profile profile. 123 265 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g00452 Pste-Chr4 3441544 3448480 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g00452 48 301 AT-hook Motif Nuclear Localized (AHL) Family AT5G62260 56.055 6.55e-91 275
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste9g01272 9 11154787 11160509 Pste4g00452 4 3441544 3448480 ECH
Pste4g00452 4 3441544 3448480 Pste4g00452 4 3441544 3448480 ECH
Pste9g01272 9 11154787 11160509 Pste4g00452 4 3441544 3448480 PCT