Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g00431 CCAAACTCAAAAGTCCACAATAATTAGTAGAAAATAAATAAATATGAATGATGTGTATTATGCAATGCAAGTGTGTAAAACTGAAGATTGAAAAATCCACATCCACCAAACTCTTGGAAGAACGAAGAGAGAATGAGGGAAGATTTTGAGTGGTAAAAAGCGTGCGTTTGTCTGCTGTGTTGTGTTGGAAGCTCAGTTTCCAGATTCGACTGTGTAAACCCTAACGCTTCGAACTCGCAAGTGCTTCGTTCGATAAGAGATTAACCAAAGCAAGGTGTTCTTAATTACTTACATTGTTGGAGTTACGATGGATTTTGATGAGTATGAATATTTAGAGAAAGCAGTTGAAAATCCTCAAGTTAAGAAGGCTAATGGTGAGGGAAGGAGTATGAAATCCGAAGAGAGAGGGCATAATGGGAGTTCAAAGCATAAGGATGATGATGTTGATCTCCATTCGAAGCGTTCAAAATCTGGAGATGATTCTCGTGATTACGAGAAACACAGAGAAAGAGGGTCATCTCGTCATGGTGCAAAGTCCAGAGATGTAGAGAAGGAGAAGGATCAGCACAGAAGCTCTGGGGGCAATAGGGATAGGAAGAGGGATAGAGACAGAGAAGAAGACAAGGATAGCAAGAGAGAAAGGGAGAGAGACAGAGATCGCGAACCTGACCTAGAAAGGGACAGGAGGGACCGTGGGAGTGAGTGTGAACGGGAACGGCGAAGCAGAAGTAGATCCGAAAGGCATCGAAGTGATCTGGATGGCAGAGACAGAGAGACAACTCGTGACAGGGACTATAGAGATACGGAAAGAAGCCGGGATAGGGATTACAGAGACAGAGAAAGGGTCAGGGAATCAAGGGAGAAGGATAGAGAAAGCAGGCCTATGTCACGTGGATTTGGGCTTTATACATGTAAAGCCAATTTGCTGCCATGTTGCGAATTTAAGGAACATGAAATTTTGTGTTGGGAAAATATGGTTTATGCTATAATTTCTCTGAAAGCAGATGAAAGAGATGTATATGAGTTCTTCTCAAGGGCTGGCAAGGTGCGAGATGTTCGTTTGATTATGGATCGCAATTCAAGACGTTCTAAGGGTGTTGGATACATTGAGTTTTATGATGTCATGTCTGTCCCCATGGCAATAGCTCTTTCGGGTCAACCTCTTCTTGGTCAACCAGTGATGGTGAAGCCATCAGAAGCAGAAAAAAATTTGGTTCAATCCACAACGTCTGTTGCTAGTGGACCCACTGGACTTATAGGCCCTTATTCTGGGGGAGGAAAGCTGTATGTTGGCAATCTGCATATCAGCATTACTGAAACTGATCTCCGTAGGGTGTTTGAAGCATTTGGCCAGGTTGAGCTAGTCCAGTTGCCTATTGATGAAAGTGGGCACTGCAAAGGTTTTGGCTTTGTGCAGTTTGCACGCCTTGAAGATGCAAGAAATGCTCAGAGCTTGAATGGTCAGTTAGAGATTGGTGGTAGGACAATCAAGGTGTCAGCTGTTACTGATCAATCAGGAATGCCAGAAGTTGGTGGAAATACTGGTGATTTTGACGATGATGAAGGAGGTGGCTTGTCGCTGAATGCGTGTTCTCGAGCATTACTTATGCAGAAGTTGGATCGGAGTGGCACAGCATCAAGCATGGCTGGTTCCCTCGGTAATTCTGTTGTCAACAACACAGGTCTTAATATACCTGCAACAGGAAACATACCTGCAGCTGTGTCTGTGGGTTCACTGGTTTCTCCCCATTCTTCTGTTCCTGCAGTAGCCGGATTGGCAGGTGGAGGTCTCCAAATTCCCACGGCTACAATTCCTTCTATTGATACAATCGGTGTTCCAAGTGAATGCTTATTGTTAAAGAATATGTTTGATCCCAAAGATGAGACTGAAGCAGATTTTGATTTGGATATTAAAGAAGACGTGGAAGCAGAATGCTCTAAGTTTGGAACATTAAAACACATATATGTTGACAAGAAGAGTGCTGGGCTTGTCTTCTTACGATTTGAAGATACCCAATCTGCAATAGGTGCACAGCGGGCTTTGCACGGAAGATGGTTTGCAGGGAAGATGATCACTGCAAGCTTCATGGTGCCTCAGTCATATGAGGATCAATTCCCAGACAGCAGAAAAATTCATGGAGTCCAATATTAGGTAGTTATTGCATGATGAGGAATCTGGTGGCAGAAATAATGGTCCTCAGAATTATACCATTTACGGCTTCCTTTGAGAAAGATTTAAGTATGCAAATATGTTCATGGAACTTTCATTTGTCTTCGATAGGTTGTTTAAAAGAGGCTGTTTGCATAATTTTTTCGGGGCTGTTGGTTTGATTTTAGCGTCCTATTAAAGTATTACATTTGTGGCTTTGGCAGTGTTAAGAAGAGTTTTGTGATGCTACAAACGTCGATGTAATTTAACTTAGGCTGATTTAAGTACGTTTGATGGTCAGCACTTTATTCGTTGGTTAACAAGCTTTGGGCGAATAGTGGTATTTGCTGCTGAGCAAATGTCCATCTCGCCGTGCTCGTGTAGCTGTATTATACATTTTGTTTGAATGCGATAGTTCAGATTGTTTTATAAACTCTGGAAGATTCCATGGTTGATCAAAGAAAACTTTGGGAGGAAAACGGAATTTCTGCTCTTCCATG 2649 0.4247 MDFDEYEYLEKAVENPQVKKANGEGRSMKSEERGHNGSSKHKDDDVDLHSKRSKSGDDSRDYEKHRERGSSRHGAKSRDVEKEKDQHRSSGGNRDRKRDRDREEDKDSKRERERDRDREPDLERDRRDRGSECERERRSRSRSERHRSDLDGRDRETTRDRDYRDTERSRDRDYRDRERVRESREKDRESRPMSRGFGLYTCKANLLPCCEFKEHEILCWENMVYAIISLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSTTSVASGPTGLIGPYSGGGKLYVGNLHISITETDLRRVFEAFGQVELVQLPIDESGHCKGFGFVQFARLEDARNAQSLNGQLEIGGRTIKVSAVTDQSGMPEVGGNTGDFDDDEGGGLSLNACSRALLMQKLDRSGTASSMAGSLGNSVVNNTGLNIPATGNIPAAVSVGSLVSPHSSVPAVAGLAGGGLQIPTATIPSIDTIGVPSECLLLKNMFDPKDETEADFDLDIKEDVEAECSKFGTLKHIYVDKKSAGLVFLRFEDTQSAIGAQRALHGRWFAGKMITASFMVPQSYEDQFPDSRKIHGVQY 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g00431 614 CDD RRM3_RBM39_like 512 594 - -
Pste4g00431 614 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 232 290 IPR000504 GO:0003723
Pste4g00431 614 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 326 395 IPR000504 GO:0003723
Pste4g00431 614 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 537 589 IPR000504 GO:0003723
Pste4g00431 614 SUPERFAMILY RNA-binding domain, RBD 229 318 IPR035979 GO:0003676
Pste4g00431 614 SMART rrm2_1 514 592 IPR003954 GO:0003676
Pste4g00431 614 SMART rrm2_1 325 397 IPR003954 GO:0003676
Pste4g00431 614 MobiDBLite consensus disorder prediction 1 194 - -
Pste4g00431 614 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 513 596 IPR000504 GO:0003723
Pste4g00431 614 Gene3D - 318 425 IPR012677 -
Pste4g00431 614 CDD RRM1_RBM39_like 228 294 - -
Pste4g00431 614 Gene3D - 226 307 IPR012677 -
Pste4g00431 614 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 221 298 IPR000504 GO:0003723
Pste4g00431 614 FunFam Splicing factor, CC1-like protein 508 607 - -
Pste4g00431 614 SMART rrm1_1 223 294 IPR000504 GO:0003723
Pste4g00431 614 SMART rrm1_1 325 397 IPR000504 GO:0003723
Pste4g00431 614 SMART rrm1_1 514 592 IPR000504 GO:0003723
Pste4g00431 614 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 324 401 IPR000504 GO:0003723
Pste4g00431 614 NCBIfam splicing factor, CC1-like family 228 605 IPR006509 GO:0003723|GO:0005634|GO:0006397
Pste4g00431 614 SUPERFAMILY RNA-binding domain, RBD 325 600 IPR035979 GO:0003676
Pste4g00431 614 Gene3D - 508 612 IPR012677 -
Pste4g00431 614 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 415 531 IPR029123 -
Pste4g00431 614 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 607 IPR006509 GO:0003723|GO:0005634|GO:0006397
Pste4g00431 614 FunFam CC1-like, splicing factor 320 427 - -
Pste4g00431 614 MobiDBLite consensus disorder prediction 24 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g00431 Pste-Chr4 3341361 3355530 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g00431 228 387 Eukaryotic Initiation Factors Gene Family AT4G34110 30.864 9.13e-15 75.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste4g00431 4 3341361 3355530 Pste4g00431 4 3341361 3355530 ECH