Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g00407 ATGTCGGGATTGGAACTCGTACCCATAGGTACAATTTTGACAGTGGTAACTAATCAAGTCTTGAAAACAGCTCAAGCAGCATCTGATGTTCTTGTTGGTAAAGAAAGTTTCAAGGCCCTTTCAAAACATCTACTTGATATCGAGCCAGTGCTAAAGGAATTACAGCTTCAAGAATTGAATGACTCTCAAGCTGCAAGAATTGCTCTGAAGTCTCTTGAAGATGACGTTAAAAAGGCAAATAATTTGGTTGACAAGTATAGGAACCGTGGCCGTTTTTACTTGCTGATTAAGTGCCGATCAATAGTTGAGGAGGTTGAACAAGTCACAAGGGATATCGGAAAGTCATTAGCTGCATTGTCTATTGCAAACGCTGAAGTTCTATCCAGAATATCTGATCAGATCAATAGACTACAAAGTGAGATGCAAAGGGAGAAGTTTGAGGCTTCACAATCTCAGATTCAAATTGTTGACAAGTTGAACCAGGGACTTAGAGAACAGAAACTAGATCAGGCTTTTGCAAATGACATATTAGAGGATATAGCAAGGGCAGTTGGGGTGCCAGTGGAACCCTCAGAGATAAGCAAAGAGTTGGCCAGCATTAGGAAGGAAAAAGAAGAAGCTTCCATCAGGAAAGAAAGAGCTGAATGTGTTCTTTTGGAGCAGATAATTCAGTTACTGTCTCGAGCTGATGCAGCAAGGGATTATGAAGAAGTGGAGAGGCAGTACTTTGAAAGGGTTAAGGTGATCGAGAGATATGATTCAAGGGAAAAATATATCCCCCCACTCAATCCTTTCCTTTGTTCTATAACTGGAGCTGTTATGGAAGATCCTGTCAGTCTTTGCACTGGTACTACATGTGAGAGATCTGCTATTGAAGCTTGGTTTTATGATGGCAACAGGACAGATCCGGAAACTAAAGAGATTCTAGAAGATACTACCTTGAGGTCTAACATTCCACTAAGGCAGTCTATTGAAGAGTGGAGAGAACTTAATTACTGTCTTGTAATAAGGTCGATAAGGGAAAATTTATTATCATACTCTGACCTGCAAGAATCCCTGAGCCAAATGCAGGCTCTAGTAAGAGAGAATTCTATTAACAAGGATTGGATTTCTATAGGAAAGGTGACTGATAATGTTATCTCTATTCTTGGGAGCTTTGATGACAGAGACGTGAAGATGAAGGTTTTGATAACTTTGAAGGATGCTGTAGAGGGGAATACAAGAAACAAGGAGAAAGTGGCTGAATCTCAAGGATGGGATCACATTATTTCCTGCTTAGGGAGTGACTCTAGCATTTCAAAGGCAGCAATCGATTTGCTATATGAGTTGCTTCAAGAACAATCTGGTTGGAATCAATATCTCTGCAAAAAGCTTTCTGAAAATCATACTGCAGTTCGATCCCTTGTTGCCCTTCTAAAGAATCATGTCAACCATTCTGCTGAGGTTGCAGAAAAGATTTTGATGAAGCTTTTTGAACTAAGTGAGAAAACCATTATTATTGCAGCTAATTTTGGCTGGTATAAACCACTTGTTGATCGCATGATTCAAGGACAAGATTCAGGCATATCAATGACAAAAGCCATAGTTAATTTGGAGTTGAATGATTCAAACTTGAAACTCCTTGGCAAGGAAGGAGCTATACCTCCTTTGCTAGAAATGCTGTTGGGCAGTATTGAATCAAAGGACTTGTCATTGTCAGCCCTGGTTAAATTAGCTGGATCCCATGCCAATAAGGGAATTATCGCTGCATCTGGAGGAGTTCCTCTTATTCTAGATTTAATGTTCTCTCCTCGGTCACAGGCATTCATTATCATTAAATGTTCTGAAATCATTGAGAAGCTTTCCTCAGGCGGTGATGGAATTGATTTCTTTGTTGATGGAGAAGGGAAACAACTTGAGTTAGATTCCATCATCACCAATTTGCTAACTTTGCAGCAGAATGCCATCTCAGGTCACAAAATCCGCAAGCCTGCACTATGTGCACTTATTGGCATTTGCAAGTTTGAGACTGGTTTGGTTAAGAAAGCAATTCTTGCAGCCAATGGTGTATCTCTAATTCTTCCACTTCTAGATGATTCTGACTCAGAAATCAGGGAGACTTCCATAATTCTGCTCTTTCTTTTCTCTCAACACGAGCCAGAAGGAGTAGTTGAATACCTCTTCAAGCCTAGAAGGCTTGAAGCCTTGATTGGATTTCTTGAGAATGAAGAGAATGATAATGTACAGATGGCTGCTGCTGGTTTAGTGGCTAACCTGCCAAAATCAGAACGGGAACTCACTATGAAGTTGATTGGGCTGGGTGGACTGGATGCAATCATAAGCATTTTGAAAACTGGCAAAATGGAAGCAAAAGAAAATGCTCTCAGTGCACTCTTCAGGTTCACAGACCCTACAAATATTGAGTCACAGCGAGATTTGGTGAAGCGCGGAATATATCCTTTGCTTGTAAGTTTTCTTAACACTGGTTCAGTCACAGCAAAGGCAAGAGCAGCAGCTTTCATTGGTGATCTTTCCATGAGTACTCCAAAGCTAACAGTTGTTCCGAAACCAACTGGTTGCTGGCTTTTCAGATCATCACGTGTTCCTTTATGTCCCGCACATGGGAGTGTATGCAGTGTGAATACCACATTTTGTCTGCTGGAAGCAAAGGCTTTACCTGGTTTGATAAAGCTGTTACACGGGGAGGTTCATGCAACTGCTTATGAAGCAATACAGACACTTTCCACATTGGTTGTAGAAGATTTTCCTCTAAGGGGAGCTCGTGTCCTGCATGAGTCAAATGTAATAAGATCCACATTGGACATTTTGAACTGGGGAGGTGAATCTCTAAAGGCAGAAGCTCTAGGGCTGTTGGAGAAGGTGTTTGTGTCAAAGGAAATGGTAGAATACTATGGAACAACAGCTAGATCACGTCTAATTGGTTTGACTGGCAAGAATATATATGGAGATGGTCACCTCAGGAGAAAGGCTGCCAAGGTTCTATCATTGCTAGAACGCTATTCAAAGTCATCATCATCTGCAATCTCTGGAGTTCTGGAGTGAAATTTTAGTCCATTCAGTAGTAACCATTGTATCCTAATAAACTTTTTTTAATCTATTGGGTATTTGTAAATTAACCTACTTAGATGCATCATGCATGTCACCTTGTTTTTCTTGAATATTGGCGTTGACAAATGGCCAATTCTTCAATATAAAGTTCCTTTGAAATTCAAATAAATTCTATGTATTCTCCTCTCCTGTCTCTTATATTTTCAC 3255 0.4028 MSGLELVPIGTILTVVTNQVLKTAQAASDVLVGKESFKALSKHLLDIEPVLKELQLQELNDSQAARIALKSLEDDVKKANNLVDKYRNRGRFYLLIKCRSIVEEVEQVTRDIGKSLAALSIANAEVLSRISDQINRLQSEMQREKFEASQSQIQIVDKLNQGLREQKLDQAFANDILEDIARAVGVPVEPSEISKELASIRKEKEEASIRKERAECVLLEQIIQLLSRADAARDYEEVERQYFERVKVIERYDSREKYIPPLNPFLCSITGAVMEDPVSLCTGTTCERSAIEAWFYDGNRTDPETKEILEDTTLRSNIPLRQSIEEWRELNYCLVIRSIRENLLSYSDLQESLSQMQALVRENSINKDWISIGKVTDNVISILGSFDDRDVKMKVLITLKDAVEGNTRNKEKVAESQGWDHIISCLGSDSSISKAAIDLLYELLQEQSGWNQYLCKKLSENHTAVRSLVALLKNHVNHSAEVAEKILMKLFELSEKTIIIAANFGWYKPLVDRMIQGQDSGISMTKAIVNLELNDSNLKLLGKEGAIPPLLEMLLGSIESKDLSLSALVKLAGSHANKGIIAASGGVPLILDLMFSPRSQAFIIIKCSEIIEKLSSGGDGIDFFVDGEGKQLELDSIITNLLTLQQNAISGHKIRKPALCALIGICKFETGLVKKAILAANGVSLILPLLDDSDSEIRETSIILLFLFSQHEPEGVVEYLFKPRRLEALIGFLENEENDNVQMAAAGLVANLPKSERELTMKLIGLGGLDAIISILKTGKMEAKENALSALFRFTDPTNIESQRDLVKRGIYPLLVSFLNTGSVTAKARAAAFIGDLSMSTPKLTVVPKPTGCWLFRSSRVPLCPAHGSVCSVNTTFCLLEAKALPGLIKLLHGEVHATAYEAIQTLSTLVVEDFPLRGARVLHESNVIRSTLDILNWGGESLKAEALGLLEKVFVSKEMVEYYGTTARSRLIGLTGKNIYGDGHLRRKAAKVLSLLERYSKSSSSAISGVLE 1013
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g00407 1013 SUPERFAMILY ARM repeat 371 713 IPR016024 -
Pste4g00407 1013 Pfam U-box domain 265 329 IPR003613 GO:0004842|GO:0016567
Pste4g00407 1013 Gene3D - 502 629 IPR011989 -
Pste4g00407 1013 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 263 334 IPR013083 -
Pste4g00407 1013 Gene3D - 6 123 IPR036537 GO:0007166
Pste4g00407 1013 SMART Ubox_2 264 327 IPR003613 GO:0004842|GO:0016567
Pste4g00407 1013 Coils Coil 127 154 - -
Pste4g00407 1013 Coils Coil 62 89 - -
Pste4g00407 1013 Gene3D - 349 501 IPR011989 -
Pste4g00407 1013 SUPERFAMILY RING/U-box 249 330 - -
Pste4g00407 1013 CDD RING-Ubox_PUB 265 314 IPR045210 -
Pste4g00407 1013 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 11 1005 - -
Pste4g00407 1013 CDD MLKL_NTD 10 142 - -
Pste4g00407 1013 Gene3D - 634 1006 IPR011989 -
Pste4g00407 1013 SMART arm_5 712 754 IPR000225 GO:0005515
Pste4g00407 1013 SMART arm_5 406 445 IPR000225 GO:0005515
Pste4g00407 1013 SMART arm_5 574 616 IPR000225 GO:0005515
Pste4g00407 1013 SMART arm_5 670 710 IPR000225 GO:0005515
Pste4g00407 1013 SMART arm_5 799 839 IPR000225 GO:0005515
Pste4g00407 1013 SMART arm_5 534 573 IPR000225 GO:0005515
Pste4g00407 1013 SMART arm_5 756 796 IPR000225 GO:0005515
Pste4g00407 1013 SMART arm_5 872 912 IPR000225 GO:0005515
Pste4g00407 1013 SMART arm_5 451 495 IPR000225 GO:0005515
Pste4g00407 1013 SUPERFAMILY ARM repeat 652 1001 IPR016024 -
Pste4g00407 1013 ProSiteProfiles U-box domain profile. 260 334 IPR003613 GO:0004842|GO:0016567
Pste4g00407 1013 Coils Coil 197 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g00407 Pste-Chr4 3117118 3122051 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g00407 265 965 U-box Gene Family AT1G76390 27.441 3.24e-40 158
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste4g00407 4 3117118 3122051 Pste4g00407 4 3117118 3122051 ECH