Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g00385 ATGTTGCTTTTAACTTGCTCCTCCTGCTACCGACACCTTACCCCATCATTTTTCTATTCTTCTTCTTCTCCCATTACATCCCCCTATAAAATATATACCCTTCCACACTTGCATCACATCTCAAGTCTTTTCATCCATTCTCCACTCACTGCTCTCGCGAGCAACATGGAAACTGATCTCAACCTCAAGGCAACTGAGCTTCGATTGGGCCTTCCTGGAACTGGAACAGAGCCTCAATCTGCTAAGCTCACCAACAAAAGGCCATTGACTGAAACTTGTCATGAGACTACTCTTTCAAATGCTCAACAACAACATCTTGTAACTAGTCATGCTGCCAAGGCAAAGATTGTCGGCTGGCCACCAATCAGATCCTACAGGAAGAACAGCCTTCATGAGATTGAAGCTGGTGGTATTTATGTCAAAGTCAGCATGGATGGAGCCCCTTACCTCAGAAAGATAGACTTGCAGCTATATGGAGGCTACACACAACTCCTTCAATCTCTAGAAAACATGTTCAAGCTTACCATAGGTAAGTACTCTGAAAAAGAAGGTTACAAGGGATCTGACTATGCACCAACATACCAAGACAAGGACGGTGACTGGATGTTAGTTGGAGATGTTCCATGGGACATGTTTGTGACTTCTTGCAAAAGGCTAAGAATCATGAAAGGATCCGAGGCCAGGGGTTTGGCCTGTGCTGTATGACAAACCAAACCACAAATATTTACCATCAACACACAAAATATGTGTTTTCGGGTGAAGGGAAAACATCCTTTCAGCCTGGGTTCTCGGATCTAAAAGGGTTTTCACTTTAGAATCACTCTACTGTATGCTTTTGGCATTTGCATACATGTATATCCAGGGAAATCGAACATACGCTGCACTTCCTTTCCTCAACTTTGGCAACATTTCTGCTTATTTTCGCATCTGCGGTGGGATGCTATGCTGTTGTTTCCAATCTTCTTTTTTTTTTTTTAAGTTTCAAATGGGAGACATTTCAGATGAAACTTTCTGTAAAAGAGAGATAGAAATTAAAAGTTTATATGTAATATTATTTCATCCAAGTTTTTTTGTTTCTTGTTCAGACAAGAACTTTAATGTGCCTGTGATATACACTGTAATATACAGTTTTCTTATGTGCCTATGATATTGAGGGACTCAAAATTAA 1168 0.405 MLLLTCSSCYRHLTPSFFYSSSSPITSPYKIYTLPHLHHISSLFIHSPLTALASNMETDLNLKATELRLGLPGTGTEPQSAKLTNKRPLTETCHETTLSNAQQQHLVTSHAAKAKIVGWPPIRSYRKNSLHEIEAGGIYVKVSMDGAPYLRKIDLQLYGGYTQLLQSLENMFKLTIGKYSEKEGYKGSDYAPTYQDKDGDWMLVGDVPWDMFVTSCKRLRIMKGSEARGLACAV 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g00385 234 ProSiteProfiles PB1 domain profile. 137 224 IPR000270 GO:0005515
Pste4g00385 234 SUPERFAMILY CAD & PB1 domains 128 223 - -
Pste4g00385 234 FunFam Auxin-responsive protein 132 234 - -
Pste4g00385 234 Pfam AUX/IAA family 98 231 IPR033389 -
Pste4g00385 234 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 59 228 IPR003311 GO:0005634|GO:0006355
Pste4g00385 234 Gene3D - 131 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g00385 Pste-Chr4 2958622 2960033 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g00385 140 230 B3 DNA Binding Superfamily AT2G46530 36.264 1.34e-11 62.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Pste4g00385 AUX_IAA 1.6e-51 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste4g00385 4 2958622 2960033 Pste4g00385 4 2958622 2960033 ECH