Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g00382 ATGCAGCCACAAGCACAACCAAACAAACCAAGCAACATTATAATAGAAGAGGACACAACAAAAGGGGGGAGCTATAGCCATAAGGAGAAACACTTTCAAAGAGGTGAAACCAAAACAGTTCATCTTTTTCCTTTTTATATCTACTCTGCTGCTAAGCTGCGTCAGTTCATTGACAAGCCTAAAATGGCAACTATGATGGCCAAGGAGCATGGTCTCAACCTCAAGGAGACTGAGCTTTGCCTCAGTTTGCCTGGCGGTGGCGGTGGCGGTGGCGGTGTCGGTGGCGGCGGCGGTGGTGCTTCTGAACAGGTGGAAACTCCTAGAGCCACTGGGAAGAGAGGCTTCTCTGAGACTGTTGATCTCAAGCTTAATCTTCAGGCCAAGGAAGATCTTAATGACAATCTGAAGAATGTCTCAAAGGAGAAGACCCTCCTCAAGGATCCTGCCAAGCCACCTGCTAAGGCTCAAGTGGTTGGTTGGCCACCAGTGAGGTCATACAGGAAGAATATGATGGCTCCGAAGGCTAGCACTGAGGATGTAGCTGAGAAGACAACAAGCAGCACCGCTTCTGCGGCATTTGTCAAAGTTTCCATGGATGGAGCACCTTACCTTCGCAAGGTGGACCTCACTATGTACAAAAGCTACAAAGACTTATCTGATGCCTTAGCCAAAATGTTCAGCTCCTTCACCATGGGTAACTATGGGGCCCAAGGAATGATAGACTTCATGAATGAGAGCAAGTTGATGGATCTTCTTAACAGCTCTGAGTATGTGCCAACCTATGAAGATAAGGATGGTGACTGGATGCTCGTGGGTGATGTCCCATGGGAGATGTTTGTTGAGTCATGCAAGCGTCTGCGAATAATGAAAGGATCAGAAGCGATTGGTCTCGCGCCAAGAGCAATGGAAAAATGCAAAAGCAGAAGCTAAAGGTGGTCTAATACATGTTGTATGTGATCTGGTATCAAAGTGGACCTATAAAAATTAAAAATATATGAAGCACTTCTGCGGAGACTATGAGGCGCAGTGTTGTTAGTTTGAACGTGTCTGTGTTTTTTGTTTTGTACTTCGTTCGTATATAGATTCAACTTTAATTTTAAGGAGCCTATGGGGAATTTGTAATGGACAAGAAGCAATAAACTTAACCTATATAGTCTGGCTTGTTTATTATGTGATCCTTCCACGCTGTCATGATTGTTGTGTGCTAAAATACCTTGAATTTTAATGCATACTTTATTCCCTCA 1244 0.4445 MQPQAQPNKPSNIIIEEDTTKGGSYSHKEKHFQRGETKTVHLFPFYIYSAAKLRQFIDKPKMATMMAKEHGLNLKETELCLSLPGGGGGGGGVGGGGGGASEQVETPRATGKRGFSETVDLKLNLQAKEDLNDNLKNVSKEKTLLKDPAKPPAKAQVVGWPPVRSYRKNMMAPKASTEDVAEKTTSSTASAAFVKVSMDGAPYLRKVDLTMYKSYKDLSDALAKMFSSFTMGNYGAQGMIDFMNESKLMDLLNSSEYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAIGLAPRAMEKCKSRS 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g00382 309 Coils Coil 121 141 - -
Pste4g00382 309 MobiDBLite consensus disorder prediction 90 113 - -
Pste4g00382 309 Pfam AUX/IAA family 105 300 IPR033389 -
Pste4g00382 309 ProSiteProfiles PB1 domain profile. 191 291 IPR000270 GO:0005515
Pste4g00382 309 MobiDBLite consensus disorder prediction 1 32 - -
Pste4g00382 309 Gene3D - 186 302 - -
Pste4g00382 309 SUPERFAMILY CAD & PB1 domains 187 290 - -
Pste4g00382 309 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 71 296 IPR003311 GO:0005634|GO:0006355
Pste4g00382 309 MobiDBLite consensus disorder prediction 1 19 - -
Pste4g00382 309 FunFam Auxin-responsive protein 186 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g00382 Pste-Chr4 2900022 2902616 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g00382 174 299 B3 DNA Binding Superfamily AT4G23980 32.540 1.47e-09 57.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Pste4g00382 AUX_IAA 7e-84 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste4g00382 4 2900022 2902616 Pste4g00382 4 2900022 2902616 ECH