Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g00365 ATAAAACATATATTCTGTTCTTTTGGATTGTTTTGATTCGATCCTCTAATCTATTTCCTCCTCCATCAATCCTCTGGTGTTGGCATGGAGAACGACACCACTGCCGCCACCGCTAACAATAACAGCAGCAGCACCGCCACTGCGACCGCGAAAGTAGGCTCGGGAGGAGTGAAATCGAACAACCATAACCTAGAAGAGGAGCATTCGAATTTGAATGGCGAGGAGCAGATGACAGAACAAGTGGATGCTGAAGAAGAGGAAGATCGACAGGCCGATGAAGACGAAGGAGAACCATCTGGATCTGCGCCCAACCCTCGCCAACCTTCAAGAACCCCTTTCACTAATCTCAGCCAGGTCGATGCTGACCTCGCACTCGCTCGCACCCTTCAGGAGCAGGAAAGGGCATATATGATGCTGCGGATGAACAATGAAGGAAGTGACTATGGAAGTTGGGAAGGTGAAAGCTATTTGCATGATGATGGGGATGACTTTGATGATCTACATGATGGCACTGATGTGGATGAGGATGATGATGAAGATGATGATAATGATGAGTATGAGGATGAAGATGTATTTGATGTTCATGCTCATACTAGTTCTGGAGAACATGTTAATCCTAGCCTTGAATTCGACCCAGATGTTTTTTCAAGTGATGAAGCATATGCAAGAGCATTACAAGAAGCTGAAGAGAGGGAAATGGCAGCTAGACTTTTGGCTCTTGCGGGGATAAATGATGGGGACCCGGAGGACATAGAGGAACATGGTGCTAATTCTCAGGATGCTTGGGAGGATGTTGATCCGGATGAACTTTCATATGAGGAATTGCTGGCATTGGGTGAAGTAGTTGGAACTGAGAGCAGAGGTCTTTCAACTGATACAATTGCCGGTTTGCCTTCAATCAACTACAAGACTGGGAGTGATCAACATGGAAGCAATGATTCGTATGTGTGTCATTTGCGGGTGGACTATGAAGATGAGGAGTCCTTGACAGTTCTTTCCTGCAAACATCTGTACCATCCTGAGTGCATTAACAATTGGTTGAAAATAAACAAGGTTTGCCCAGTTTGTAGTACCGAGGTGTCTGCTTCCGGGAGCAACTTGTAGGAGGATTTAATAGATGTTCTTCACTTCAAATTGAAGAAAATTTGTGCAAGTTCTTATTTTAATGGCATTGCTATGATGGGGAGATAGTCTGTGCTTTATTGTTTCTAGCTCCGTTTTAATGTAACATGGTTATCTAGATTATCCTTTTTTTAATGGAATGAATGGCATTAAAGTGGCCAGTTCTTTTACAGGGCTGAGTGGATAACTGATG 1315 0.4403 MENDTTAATANNNSSSTATATAKVGSGGVKSNNHNLEEEHSNLNGEEQMTEQVDAEEEEDRQADEDEGEPSGSAPNPRQPSRTPFTNLSQVDADLALARTLQEQERAYMMLRMNNEGSDYGSWEGESYLHDDGDDFDDLHDGTDVDEDDDEDDDNDEYEDEDVFDVHAHTSSGEHVNPSLEFDPDVFSSDEAYARALQEAEEREMAARLLALAGINDGDPEDIEEHGANSQDAWEDVDPDELSYEELLALGEVVGTESRGLSTDTIAGLPSINYKTGSDQHGSNDSYVCHLRVDYEDEESLTVLSCKHLYHPECINNWLKINKVCPVCSTEVSASGSNL 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g00365 339 MobiDBLite consensus disorder prediction 116 158 - -
Pste4g00365 339 MobiDBLite consensus disorder prediction 1 91 - -
Pste4g00365 339 MobiDBLite consensus disorder prediction 1 32 - -
Pste4g00365 339 MobiDBLite consensus disorder prediction 74 90 - -
Pste4g00365 339 MobiDBLite consensus disorder prediction 50 66 - -
Pste4g00365 339 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 261 337 IPR013083 -
Pste4g00365 339 SUPERFAMILY RING/U-box 294 333 - -
Pste4g00365 339 ProSiteProfiles Zinc finger RING-type profile. 288 329 IPR001841 -
Pste4g00365 339 MobiDBLite consensus disorder prediction 137 158 - -
Pste4g00365 339 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED 39 337 IPR043312 -
Pste4g00365 339 Pfam RING-H2 zinc finger domain 291 328 IPR024766 GO:0008270
Pste4g00365 339 FunFam E3 ubiquitin ligase BIG BROTHER-related 253 335 - -
Pste4g00365 339 Coils Coil 46 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g00365 Pste-Chr4 2805331 2811738 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g00365 72 231 C3H Transcription Factor Family AT3G19910 46.995 1.48e-35 127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste4g00365 4 2805331 2811738 Pste4g00365 4 2805331 2811738 ECH