Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g00359 ATGTCTTCCGGCGACGGCGGAGCAAAGCCGTTCTTCTGCCATTTGTGCAATCGTAGGATCACGTGCTCCGATGACTCGGAACCGTTCTGCCCGATCTGTCTGGAGGGTTTCGTCGAAGAATGGAACCCTAATAACCAAAACCCTAACCCTAGCCTTTTCCCGGAGAGTGAGGAATCCTCTGATCCCGAATTCCCCTTCCACCCCTTCTCCCTGCTCCCTCTATTGTTCTCGACCGTCTCCAGAGCCCGACCCGAACCGGACATGTTCGACCCAATGGAGTTCCTCCAGAACCACCTTCAGGACCTCCGAGCCGACGGCGCCAACATCCAAGTCGACTTTGACCACCATTCCGAACCGGGGCTCCGTATCCCGGCCAACATCGGCGACTACTTCCTTGGCCCCGGCCTAGAGCAGTTGATTCAGCAGCTCGCCGACAACGACCCTAATCGATACGGCACGCCGCCCGCTGCCAAGAACGCCATCGACAATCTTCCCACGATCACCGTCGACGACGAGTTGCTGAACTCGGAACTCAACCAGTGTGCAGTTTGTCAGGACGAGTTCGAGAAGGGCTCGCAGGTGACGCAGATGCCCTGCAAGCACGCCTACCATGGTGACTGCTTGATTCCATGGCTTCGCCTGCATAACTCCTGTCCTGTTTGTCGGTATGAATTGCCCACCGACGATGCGGATTACGATAATCGCTTACGGGCAAATGGCAGCAGCGATGGTGGATCAAGGTCTGCTGGAAGCGACAGCACCGGTGGAGGCGGAGGTGGAGGGGGAACTAATAGACCTGTTCGCAGGACTGTTAGAATATTTTTGCGGCATCCTTTTGATGATGGCGGCTCTGCGCAGGACAGTGCTGAAAGGGGATGGGGAGGTTGGGATTAA 894 0.566 MSSGDGGAKPFFCHLCNRRITCSDDSEPFCPICLEGFVEEWNPNNQNPNPSLFPESEESSDPEFPFHPFSLLPLLFSTVSRARPEPDMFDPMEFLQNHLQDLRADGANIQVDFDHHSEPGLRIPANIGDYFLGPGLEQLIQQLADNDPNRYGTPPAAKNAIDNLPTITVDDELLNSELNQCAVCQDEFEKGSQVTQMPCKHAYHGDCLIPWLRLHNSCPVCRYELPTDDADYDNRLRANGSSDGGSRSAGSDSTGGGGGGGGTNRPVRRTVRIFLRHPFDDGGSAQDSAERGWGGWD 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g00359 297 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 143 228 IPR013083 -
Pste4g00359 297 FunFam E3 ubiquitin-protein ligase RING1-like 142 228 - -
Pste4g00359 297 MobiDBLite consensus disorder prediction 234 297 - -
Pste4g00359 297 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 87 226 - -
Pste4g00359 297 SUPERFAMILY RING/U-box 160 229 - -
Pste4g00359 297 Pfam Ring finger domain 179 222 IPR001841 -
Pste4g00359 297 ProSiteProfiles Zinc finger RING-type profile. 181 222 IPR001841 -
Pste4g00359 297 SMART ring_2 181 221 IPR001841 -
Pste4g00359 297 MobiDBLite consensus disorder prediction 239 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g00359 Pste-Chr4 2765386 2766279 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g00359 125 233 C3H Transcription Factor Family AT5G01980 46.789 4.82e-32 122