Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g00333 ATGTCGGATGCACCACCGTCTCAGCCACCGCCTCCAACCACCGGATCGCCGCCGCCCTACTGGTGCTACCACTGCGAGAAGCGCGTTTCCGTCGAAACGCTCGCCAATCTCCCCGACGTCGTGTGCGGTGAGTGCAAGAACGGCTTCGTCGAATCCATTCCCACGCCCTCACGCTCTCGCTCTCCTTCCTCCTCCTCCGACGACCCCTACTTCGGCTCTCAGTTCCTTCAGGTCCTTCGCCTAATCGCGCAATCGGCGCGTGACGACGACGCGTCTCCGCCTCCGCCGCCAAACCGCTCTCCGGAGAACGATTTCCTGAGGATCGAGCTCGGCGGCTGGGACAACGACGAGGAAAACGAAAACGAAAACGACAACGACGACGATAACGAGGAGGGCGTCGAGTTCGAGGAACACGAGGAACCGGAGGATCGGTCCGGCAGCGAGGATCCGCACGGAGAAGACGAGGATCTGAGAAGGAGGAGGCGTGAGCTTCTTCGGCTTCGGATTAGGGATTTGGCGACGCGCACAAGGAGCATGCGGAACCGGATCTTGGATTGGGCCGAGATTCTGATGGGCCTGGAGGACAATTCCATCGAGTTCCGCCTCCAGCTACCGGAATCCGACCGCTACGTCGGGAATCCGGAGGATTATGTTGACGCGGCGGAGTACGAGGCGCTGTTGCAGACGCTGGCGGAGAGCGACGGCGGAGGCAGGAGAGGAGCTCCGCCGGCGTCGAAGGCTGTGGTTGAAGCCTTGCCGGTGGTGAAGATTGTGTTGGAAAGCGAAACCGTGGTGTGCGCCATTTGTAAGGATTTGCTCGGTGTTGGAGATGCGGCAAAGAGATTACCGTGCGGGCATCGGTATCATGGCGATTGCATTGTTCCATGGTTGAGCTCTAGAAATTCTTGCCCTGTTTGCAGGTTTGAGCTACCCACTGATGATAAAGAATACGAGGAAGAGAGAGTGGCCTCTTCAAATTCTAACGGAGCTTCCACTTCCGCTGGAGGTCGTAGTGCCGTTGTTTGA 1026 0.5877 MSDAPPSQPPPPTTGSPPPYWCYHCEKRVSVETLANLPDVVCGECKNGFVESIPTPSRSRSPSSSSDDPYFGSQFLQVLRLIAQSARDDDASPPPPPNRSPENDFLRIELGGWDNDEENENENDNDDDNEEGVEFEEHEEPEDRSGSEDPHGEDEDLRRRRRELLRLRIRDLATRTRSMRNRILDWAEILMGLEDNSIEFRLQLPESDRYVGNPEDYVDAAEYEALLQTLAESDGGGRRGAPPASKAVVEALPVVKIVLESETVVCAICKDLLGVGDAAKRLPCGHRYHGDCIVPWLSSRNSCPVCRFELPTDDKEYEEERVASSNSNGASTSAGGRSAVV 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g00333 341 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 234 313 IPR013083 -
Pste4g00333 341 Pfam Ring finger domain 266 307 IPR001841 -
Pste4g00333 341 SUPERFAMILY RING/U-box 260 313 - -
Pste4g00333 341 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 123 311 - -
Pste4g00333 341 MobiDBLite consensus disorder prediction 47 76 - -
Pste4g00333 341 MobiDBLite consensus disorder prediction 323 341 - -
Pste4g00333 341 Pfam zinc-ribbon 20 53 IPR039525 GO:0061630
Pste4g00333 341 SMART ring_2 266 306 IPR001841 -
Pste4g00333 341 MobiDBLite consensus disorder prediction 52 72 - -
Pste4g00333 341 MobiDBLite consensus disorder prediction 317 341 - -
Pste4g00333 341 ProSiteProfiles Zinc finger RING-type profile. 266 307 IPR001841 -
Pste4g00333 341 MobiDBLite consensus disorder prediction 115 143 - -
Pste4g00333 341 MobiDBLite consensus disorder prediction 114 157 - -
Pste4g00333 341 FunFam E3 ubiquitin-protein ligase RING1-like 229 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g00333 Pste-Chr4 2604547 2605572 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g00333 177 319 C3H Transcription Factor Family AT5G01980 49.333 2.49e-35 132