Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g00315 GTAAGACTGGGGCACAATTCTGAGTCGTGAATCATCGTTGCTGTCGAAGAAGTTTAATCCCTCATTCAGAGTTTCCCTCAGATTTTGCGTTAGGTGAGCTTTTAATGGTTCTGTTTCTAGGGAGGCCGGGGAAAGACAAATTGTTATTTTAATTTCATGGATGACCCTATATATATTAGTTCATCAGATGATGACTTGGAGGAGATAGAAGACCCAAGGACTCTTCCAAGATGGGCTAATACTGCCAAAAAGAGTTCAGATTATGGTGGATGGTCTAGGCTGGATGGTTCTTTAGGAGGGGCAAATAGTTCAAACACTAGCCCTTCTAATGTTTATAATCACCGAACCAGTAATACTCAACCTGTGTCCAGCACCAATACTCTGAACCACAGAATCTCACAAAGAGTTGAACCTTCCTACCATGCCCAGAATGGAAACTCAAGTCAGCAACAAACAGTTAATTCCCGAAATTCAAATACTCGTGGTACAGATTATGACAAAATGTCATCTTCACAAGCTGTCAAAAGGACCCTTCCATCATCTCTTCAACCTTCTGCAACAAGGGCTCTTCCTTCTTCCTCATTTGCATCAGACAGCAGATTAAGCAACTCAAAGGATAGCGTGAGCAGCAGTCAACTTCATGATGCATATAAGAATCGTCGCCATGGAGTTGGACCTAGCACATCCAGTGACAGGGGTTACATTCGTGACAGTTTTAGCAGAGGCTACGATGAAGATCGTTTCCTATATCAAAATGGGGGGAATAGGATTCTTCCTCCTTCTTTGATTCTCGGAAAGGCTATAACTCCACAATTTGCTGCTTCTAGTGAATCTGTGTATCGTTCTGGGGCAGGTGATGAGAGGGCTTCTGGAAATGATGAGAGACTAATTTATGAGGCAGCATTACAGGATATCAGTCAACCTAAAACAGAAACTGATTTAGCTGCTGGTGTATTGTCTGTCTCTCTTCTGAGACATCAGAAAATTGCATTGGCTTGGATGCTTCAGAAGGAAACCAAGAGTTTGCATTGCTTGGGGGGGATTTTGGCTGATGACCAGGGCCTTGGAAAGACAATTTCAATGATTTCCCTCATCCTGGCACAGAGGTTATTACAGTCAAAATCAAAAACAGATGATACATGCAATCATAAAACTGAGGCTTTGAATTTGGACGACGATGATGACAACATTGACAGTGTTGATGTAGAAAAGCATAAAAATAGTGAAGAAATTAAAGATATAAAACCTATTAGAGAGCCAAGCAGTTCAACACAGGCACCCAGCAGAAAAAGGCCAGCTGCTGGTACGCTAGTTGTCTGCCCTGCTAGTGTTCTTCGACAGTGGGCCAGGGAACTTGATGAAAAAGTTGGAGATGAAAAGCTTTCTGTTTTGGTTTATCATGGGGGCAGTAGGACAAAGGATCCTGTTGAACTTGCAAAATTTGATGTGGTTCTCACAACATACTCTATCGTGACTAATGAAGTTCCCAAGCAACCATTAGTTGAGGAGGATGATATTGATGAAAAAAACGGTGAAAGATTTGGGCTATCCTCTGAGTTTTCTGTTAGTAAAAAGAGGAAAAAGCCATTTAATGGAAATAAGAAGAGTAAAAAGGTTAGAAAAGGAACTGACAGTTCTATTGAATGTGGTTCAGGTGCTCTTGCAAAAGTAGGTTGGTTTAGGGTTATTCTAGATGAGGCTCAAACAATAAAGAATCATAGAACTCAAGTGGCTAGAGCTTGCTGCAGCCTTAGAGCCAAAAGAAGATGGTGCTTATCTGGAACGCCTATTCAAAATACTATTGATGATTTGTATAGCTACTTTAGGTTCCTAAAATATGATCCTTATGCTGTATATAAATCATTCTATAATACGATAAAAGTTCCAATATCCAGAGATCCTATCCAAGGCTACAAGAAACTTCAAGCAGTTTTAAGGGCCATAATGCTACGTCGTACAAAAGGAACTTTGCTCGATGGGAGGCCAATAATAACATTGCCTCCTAAGACTATTGAACTCAGCAAGGTGGATTTCTCGATTGAGGAACGGGCTTTTTACATGAAGTTAGAATCTGACTCTCGCGTGCAATTTAAGGCATATGCTGCTGCTGGGACAGTGAACCAAAACTATGCTAATATTCTTTTAATGCTTTTACGTCTTCGACAGGCTTGTGACCATCCGCTTCTTGTTAAAGATTATGATTCTGATCCTGTTGGGAAAGATTCTGTTGAAATGGCAAAAAATCTTCCAAGGGAAATGCTGATTAATCTGTTTAATAGTTTGGAAGCAACCTTTGCTATATGTCATGTTTGCCATGATCCCCCTGAAGAACCTGTAATTACGATGTGTGGCCATGTCTTCTGTTATCCGTGTTTATCAGAATATTTGACTGGTGATGATAACATGTGCCCGGCAGTTGATTGTAAAGTACAAATTGGTGAAGATCTGGTTTTCTCCAAAGCTACTTTAAGGAGTTGCATCTCTGACGATATTGACAGTGTTAGTTCTGCAAATTCGCATCTTTGTGATTATTCACTAGTGCAGCAGAGTGACTACACTTCATCTAAAATCAAAGCTGTTCTGGAGGTTCTGCAGTCAAATTGTAAATTGAAGATTTCTAGTTCTGACTCTGGAGGTGGTAGAGATTCACCTTCTTCTAATAATTTAGATGTTGAAGACTGTGATTCAGATTTTAAGGTTACAAAACACACAAGAAAGTATTCTGAGTTCACAGCTAAAGGACCAATAAAGGCTATAGTATTTTCCCAGTGGACAAGCATGTTGGACTTAGTAGAGATATCATTGAGACAATTTGGCATACAGTTCCGGAGACTTGATGGTAGGATGACTCTGGGTGCGAGGGACAAGGCTGTTAAGGATTTCAATACCGAACCTGAGGTTTGGCCATTCCCAACTTTGTTAATGCTGTAA 2931 0.4043 MDDPIYISSSDDDLEEIEDPRTLPRWANTAKKSSDYGGWSRLDGSLGGANSSNTSPSNVYNHRTSNTQPVSSTNTLNHRISQRVEPSYHAQNGNSSQQQTVNSRNSNTRGTDYDKMSSSQAVKRTLPSSLQPSATRALPSSSFASDSRLSNSKDSVSSSQLHDAYKNRRHGVGPSTSSDRGYIRDSFSRGYDEDRFLYQNGGNRILPPSLILGKAITPQFAASSESVYRSGAGDERASGNDERLIYEAALQDISQPKTETDLAAGVLSVSLLRHQKIALAWMLQKETKSLHCLGGILADDQGLGKTISMISLILAQRLLQSKSKTDDTCNHKTEALNLDDDDDNIDSVDVEKHKNSEEIKDIKPIREPSSSTQAPSRKRPAAGTLVVCPASVLRQWARELDEKVGDEKLSVLVYHGGSRTKDPVELAKFDVVLTTYSIVTNEVPKQPLVEEDDIDEKNGERFGLSSEFSVSKKRKKPFNGNKKSKKVRKGTDSSIECGSGALAKVGWFRVILDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNTIDDLYSYFRFLKYDPYAVYKSFYNTIKVPISRDPIQGYKKLQAVLRAIMLRRTKGTLLDGRPIITLPPKTIELSKVDFSIEERAFYMKLESDSRVQFKAYAAAGTVNQNYANILLMLLRLRQACDHPLLVKDYDSDPVGKDSVEMAKNLPREMLINLFNSLEATFAICHVCHDPPEEPVITMCGHVFCYPCLSEYLTGDDNMCPAVDCKVQIGEDLVFSKATLRSCISDDIDSVSSANSHLCDYSLVQQSDYTSSKIKAVLEVLQSNCKLKISSSDSGGGRDSPSSNNLDVEDCDSDFKVTKHTRKYSEFTAKGPIKAIVFSQWTSMLDLVEISLRQFGIQFRRLDGRMTLGARDKAVKDFNTEPEVWPFPTLLML 924
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g00315 924 MobiDBLite consensus disorder prediction 1 74 - -
Pste4g00315 924 CDD SF2_C_SNF 861 915 - -
Pste4g00315 924 SMART ultradead3 267 579 IPR014001 -
Pste4g00315 924 Gene3D - 244 335 IPR038718 -
Pste4g00315 924 MobiDBLite consensus disorder prediction 89 162 - -
Pste4g00315 924 SMART ring_2 716 754 IPR001841 -
Pste4g00315 924 Pfam Zinc finger, C3HC4 type (RING finger) 716 752 IPR018957 GO:0046872
Pste4g00315 924 CDD DEXDc_SHPRH-like 271 600 - -
Pste4g00315 924 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 481 612 - -
Pste4g00315 924 ProSitePatterns Zinc finger RING-type signature. 731 740 IPR017907 -
Pste4g00315 924 Gene3D - 367 455 IPR038718 -
Pste4g00315 924 MobiDBLite consensus disorder prediction 347 365 - -
Pste4g00315 924 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 64 915 - -
Pste4g00315 924 Pfam SNF2-related domain 274 677 IPR000330 GO:0005524|GO:0140658
Pste4g00315 924 MobiDBLite consensus disorder prediction 473 492 - -
Pste4g00315 924 Gene3D - 615 922 IPR027417 -
Pste4g00315 924 MobiDBLite consensus disorder prediction 45 74 - -
Pste4g00315 924 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 692 783 IPR013083 -
Pste4g00315 924 MobiDBLite consensus disorder prediction 89 184 - -
Pste4g00315 924 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 286 562 IPR014001 -
Pste4g00315 924 MobiDBLite consensus disorder prediction 1 17 - -
Pste4g00315 924 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 365 452 - -
Pste4g00315 924 Gene3D - 457 612 IPR038718 -
Pste4g00315 924 ProSiteProfiles Zinc finger RING-type profile. 716 752 IPR001841 -
Pste4g00315 924 MobiDBLite consensus disorder prediction 333 381 - -
Pste4g00315 924 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 261 600 IPR027417 -
Pste4g00315 924 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 611 913 IPR027417 -
Pste4g00315 924 SUPERFAMILY RING/U-box 714 772 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g00315 Pste-Chr4 2455002 2464250 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g00315 1 915 RAD5 or RAD16-like Gene Family AT1G50410 55.508 0.0 918
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pste4g00315 SNF2_N 3.1e-68 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste4g00315 4 2455002 2464250 Pste4g00315 4 2455002 2464250 ECH