Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g00312 GCGCTGGTTGTTGGCGCTAAAACGAAAACATATGTATTCGGTTTTCCCTCCTTTGATTTCCCATATATATTGGAATCTTTGGTATTCTCCCTTGGAAACCAAAGCAGCGAGGGAGTGAGAGCAGAGCATTGTTATTTGTTAAGCTTCAGATCTGAAATGGCATCACAATCGAGGAAGAGAGTTGATGCCGTAGATTCTCGTGCTGCTTCTGTTCTTGTTCGCGCCAAAGATGGCAGCGCTTTTGCTCGATGTGATGATTGCAAGAAGAACGTGCCGGTTGCACTCATTGACATGCACAGTTGCAGCCTTGAAGCTAAAATTAAAATGAATTTAGATGCTCAGGTTGTAGAGCAGGCTACTGAAGCCAAGAAGCTAGAGAGGAAGAAGTCCAAATCTAAAGAACCAAAGGCAAAAAAGACTAAGGTTGAGAAGGAGAAGAAGGTTAAGGATCCTAACATGCCTAAGCGTCCTCCCACAGCCTTCTTTGTCTTCTTGGATGATTTTAGAAAATCTTTTAAGGAAGCTAATCCTGATTCAAAGGATATTAAAAGGGTGAGCAAAAGCTGTTCAAGTCTGTTTTGGCTTTTAATAGGTGGATCGTTGTTAGGGTTTGTTGGTAAAGAGGCTGGTGAAAAGTGGAGGTCTATGACTGATGAAGAGAAAAAGCCTTATTTGGATAAAGTTGCTGAGCTCAAGGCAGAGTATGAGAAGGCTATGGCAAACTATAAAGCTGGCGAAGAAGATATAGAAGGTCAAGCTGGATCCGATAAGGAAACTACTGCAAAAGAAGTGGTAGAAGAGTTAACAGATGAAGAGTAATGGTGGAGTTTTGTCACTTCTTAAGCCTGATGACTATTATTGAAGGATCCACTGAATTACTTAGACAGACTAGGCTTGTAAATTTTGGAACATGTTTTAGTTGGAGTTTTATATTTAGGTATTGCTACTTTAAATGCTGTTGAAGTCCCAGAGCAACATCTTGTCATTGTAATTTTCTTTTCAAACATTCATAGTGGTCGAATTCCTAAAAGAATGCGTTTTGGCGTTTTGGTGTTGGCTACTGCTTGAATATATGTATGTAATGATTATATCGTCTGGTGTGGCTAGTTGACATGTGTGTGTCATTCAGTAGTAGGAGTTGCTTTGCTTTGTTGGCTTCATACCCACCAGGTTTTTCTGGATAAGATTCTTTGAGGGCATGTTGTACTTTAGTCTTCAGCATTGTGCCAGGGTCCACATGTCCTAGGGTTGTGCTGTGATATCTTCAGTTTGCCCATCCTTATTTGAGCA 1290 0.407 ALVVGAKTKTYVFGFPSFDFPYILESLVFSLGNQSSEGVRAEHCYLLSFRSEMASQSRKRVDAVDSRAASVLVRAKDGSAFARCDDCKKNVPVALIDMHSCSLEAKIKMNLDAQVVEQATEAKKLERKKSKSKEPKAKKTKVEKEKKVKDPNMPKRPPTAFFVFLDDFRKSFKEANPDSKDIKRVSKSCSSLFWLLIGGSLLGFVGKEAGEKWRSMTDEEKKPYLDKVAELKAEYEKAMANYKAGEEDIEGQAGSDKETTAKEVVEELTDEE 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g00312 272 MobiDBLite consensus disorder prediction 246 272 - -
Pste4g00312 272 SUPERFAMILY HMG-box 148 243 IPR036910 -
Pste4g00312 272 SMART hmgende2 153 244 IPR009071 -
Pste4g00312 272 Coils Coil 108 128 - -
Pste4g00312 272 PRINTS High mobility group (HMG1/HMG2) protein signature 208 227 - -
Pste4g00312 272 PRINTS High mobility group (HMG1/HMG2) protein signature 227 247 - -
Pste4g00312 272 PRINTS High mobility group (HMG1/HMG2) protein signature 136 156 - -
Pste4g00312 272 Gene3D High mobility group box domain 144 263 IPR036910 -
Pste4g00312 272 MobiDBLite consensus disorder prediction 122 152 - -
Pste4g00312 272 Pfam HMG (high mobility group) box 205 243 IPR009071 -
Pste4g00312 272 Pfam HMG (high mobility group) box 154 191 IPR009071 -
Pste4g00312 272 MobiDBLite consensus disorder prediction 136 152 - -
Pste4g00312 272 Coils Coil 228 248 - -
Pste4g00312 272 MobiDBLite consensus disorder prediction 246 264 - -
Pste4g00312 272 PANTHER HIGH MOBILITY GROUP B PROTEIN 12-RELATED 205 269 - -
Pste4g00312 272 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 154 243 IPR009071 -
Pste4g00312 272 CDD HMG-box_AtHMGB1-like 155 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g00312 Pste-Chr4 2428350 2430324 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Pste4g00312 HMG_box 6.3e-10 CL0114
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste4g00312 4 2428350 2430324 Pste4g00312 4 2428350 2430324 ECH