Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g00271 GCTAAGTCTATAATCTTTTGTGTGATGGAAAAGCTACTTTTTTCTCCGTCTTTCTACCTCTTTCACGTTGTTTTCCTATCATTTGTTCTTCTTTCTATGATACCAATAAGGGGTTTCCTCACATTCAACTTTAGGAAAGTATCGAGTGGAATGTTTCAATATGAAATCTAAGAGTTTGATAAGCAAGAGACAAATTAGCATAAGATTGAGAAAAATGATAAAGTGTATATGTTCGGGGGAGCAGTTAATGGTAGATGAATTAAATTACTCATCAGAATCCCTAGCAACCAGGGACTATTCAGCAAGTGGTGGCTATTCATCTCGACCTGGTGAAATCGACACAAAGGTTGATAATAGCAACATCGAAGAAGCAGAGTCGTCTCTCCGTGAAAGTGGTTACTTAAACTATGAGGAAGCTAGAGCCTTACTTGGAAGACTTGAGTATCAGAAAGGCAATATCGAAGCTGCACTTCATGTATTTGAAGGAATAGATATTGCTGCTGTCATTCCTAAGATGAAAGTTTCTATATCTAGAAGATGTGAACCCAATAGACGCCGTTCGCAAAGTGATGCAATGCCTCCAATGTCAATGCATGCTGTTAGTTTACTCCTTGAAGCTGTTTTTCTCAAGGCTAAAGCGTTCCAGGCTCTTGGAAGGTTTCAAGATGCTGCTCACTCATGCAAAACTATTTTAGACACTGTTGAATCTGCTATGCCAGAAGGGTGGCCTGAAAACTTTGTTTCAGACTGTAAACTACAAGAGACCGTGGCTAATGCTGTAGAACTGCTTCCAGAGTTGTGGAAGCTTGCAGGCTCTCCTCAGGATGTTATTTCATCGTTTAGGAGGGCCATGCTTTATCGTTGGAATCTTGATATTGAAGCCACTGCAAGAATACAAAAGGAATTTGCTTTTTTTCTTCTGTATAGTGGTTGTGAAGCTAGCCCTCCTGCTCTCCGATCTCAATTGGATGGTTCCTTTGTACCAAGGAACAACATAGAAGAGGCTATTCTTCTGCTTCTGATTCTAATAAGAAAATCTGTTCTTGGAAACATTCTATGGGACCCTTCATTAATTGATCACCTTTCCTTTGCTCTAAGCATTTCTGGGGAATTCATGACTCTAGCTCAACAGATAGAGGAATTTCTTCCTGAAAACATGGAGAGAAAAGAAAGATATTATACTCTAGCTCTTTGTTACTATGGGGAAGGCGAATATATGAATGCTTTGGATCTTCTGAGGAACTCTTTGAATCATAGAGAGAACTCAGACTGCACAAGGGAATTGCTTATAGCTTCAAAAATTTGTGCAGACAACAAAATTTGCATTGAAGATGGAATTAAATATTCTTGCAAAGCTATTTCTCAGGTGTATAAAAGTTGCATGCATATGGTAGCTATTGCAAATTGCTTACTAGGTGTTCTACTGTCATCAAAATCCAGGTCAGCTGCTTCTGAATCAGAGAGAGTTTTTTTGCAGTGTGAAGCACTCGGTGCTCTAAAAGACGCTGAGAGAATGATGAGGGAAAGTGATCCTTACATTGTCCTTCATCTTTGTCTCGAGTATGCTGAGCAGAGGAAGTTAAACATTGCTTTTGATTATGCAAAAAAACTCATACAGCTTGAGGGTGGATCTAGTGTCAGTGGATATATTCTACTTGCACGGATTTTATCAGCTCAACAAAAGTTTGTAGATGCAGAGCTTGTTATAGATGCTGCTCTAGATCAAAGTGGGAAGTGGGATCAAGGAGAATTATTGAGAACTAAAGCTAAACTACGGATAGCACAGGGAAAATTAAAAAATTCAGTGGAGACATATACTTTTCTTCTTGCTGTCCAACATAAAAGTTTAGGCACAACAAGTAAGGTTGTGAAAGGTAAGGGAAACCGTGACAGAAGACTGGAAATGGAAATATGGCATGATTTAGCCAATGTGTACACGGCCTTATCACAGTGGCAGGATGCAGAAGTTTGTCTTGCGAAATCTGAGGCTATTAATGCATATTCTGCTTCTAGATGGCACACAAAAGGTTTACTTTTTGAAGCCAAAGGTCTTCATGAAGAAGCTCTGAAATCATTTAGGAAAGCATTAGATATTGAGCCCAACCATGTGCCAAGTTTGATATCAACAGCCTGTGTACTGAAACACCTAGGTGGTCAATCATCTTCAATTGTTAGAAGCCTTCTCACTGATGCATTACGCATTGACAGAACAAACTCATCAGCTTGGTATAATCTTGGACTGCTCTACAAAGCAGATTTGGGGACATCAGCGGTGGAAGCTGTGGAATGCTTTGAAGCAGCGGCTTTCCTTGAAGAATCTTCACCAATTGAACCCTTTAGATAACACTTTCAACTTTATTTTTGTTGACATATAACATAATGCTACATGTATGGTGGTAAAGTTCGGCATTTTACATCTAATTGATAGGCGAAATGAGTAGGAGGAGAAATAACACAGGTAAAATGTTTCTCTTATAAGTCATCATGTAATTTTTTTTTTATAAGCCG 2508 0.3896 MKSKSLISKRQISIRLRKMIKCICSGEQLMVDELNYSSESLATRDYSASGGYSSRPGEIDTKVDNSNIEEAESSLRESGYLNYEEARALLGRLEYQKGNIEAALHVFEGIDIAAVIPKMKVSISRRCEPNRRRSQSDAMPPMSMHAVSLLLEAVFLKAKAFQALGRFQDAAHSCKTILDTVESAMPEGWPENFVSDCKLQETVANAVELLPELWKLAGSPQDVISSFRRAMLYRWNLDIEATARIQKEFAFFLLYSGCEASPPALRSQLDGSFVPRNNIEEAILLLLILIRKSVLGNILWDPSLIDHLSFALSISGEFMTLAQQIEEFLPENMERKERYYTLALCYYGEGEYMNALDLLRNSLNHRENSDCTRELLIASKICADNKICIEDGIKYSCKAISQVYKSCMHMVAIANCLLGVLLSSKSRSAASESERVFLQCEALGALKDAERMMRESDPYIVLHLCLEYAEQRKLNIAFDYAKKLIQLEGGSSVSGYILLARILSAQQKFVDAELVIDAALDQSGKWDQGELLRTKAKLRIAQGKLKNSVETYTFLLAVQHKSLGTTSKVVKGKGNRDRRLEMEIWHDLANVYTALSQWQDAEVCLAKSEAINAYSASRWHTKGLLFEAKGLHEEALKSFRKALDIEPNHVPSLISTACVLKHLGGQSSSIVRSLLTDALRIDRTNSSAWYNLGLLYKADLGTSAVEAVECFEAAAFLEESSPIEPFR 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g00271 727 Gene3D Tetratricopeptide repeat domain 61 567 IPR011990 GO:0005515
Pste4g00271 727 SMART tpr_5 151 184 IPR019734 GO:0005515
Pste4g00271 727 SMART tpr_5 336 369 IPR019734 GO:0005515
Pste4g00271 727 SMART tpr_5 493 526 IPR019734 GO:0005515
Pste4g00271 727 SMART tpr_5 529 562 IPR019734 GO:0005515
Pste4g00271 727 SMART tpr_5 616 649 IPR019734 GO:0005515
Pste4g00271 727 SMART tpr_5 582 615 IPR019734 GO:0005515
Pste4g00271 727 Pfam Tetratricopeptide repeat 617 649 IPR019734 GO:0005515
Pste4g00271 727 ProSiteProfiles TPR repeat profile. 616 649 IPR019734 GO:0005515
Pste4g00271 727 SUPERFAMILY TPR-like 325 552 IPR011990 GO:0005515
Pste4g00271 727 Gene3D Tetratricopeptide repeat domain 575 724 IPR011990 GO:0005515
Pste4g00271 727 PANTHER PROTEIN NPG1 20 727 IPR043376 -
Pste4g00271 727 SUPERFAMILY TPR-like 530 697 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g00271 Pste-Chr4 2206164 2211407 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g00271 10 727 Calmodulin-binding Proteins AT4G28600 52.653 0.0 704
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste4g00271 4 2206164 2211407 Pste4g00271 4 2206164 2211407 ECH