Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g00268 TGGGAAGTGAAATTTTCCCCTTTCCAAACCCTAAGCGGCTACTCACTTGTTAGTTGTAAGTTCTGTTCAGAGGTTGGAGGCCGTCGTCTTCCATCGCGCCAGAGCGTAACTCAGCCTATTTTATTTCTGTGAAGTACCGGGAAATTGACTTGGTCTCACCCTCATTCCCTCTCATTCTCGTTACTCGTTTGAAAGCCGCAAAGCCACCTTGTCGTATCCGACCAAGTAGCCGAGCCATTTATATTTGTTTCCCTGGGGAAATGGTTCTATCAAACAAGAAACTCAAGCTTAAGCTGAGAGCTGAATTAGCCCAACAGCAAAATCAAATCGGCGCTGAAGCCCCTTCATCTTCCCACTCTCTCAAAACTCTTCTGGACTCCGCCAGATTGTCCAAGAGAGAGAAGCGGAGAAAACTTCGATCCTCGCAGCCCTTCAACCAAAAGCGAAAGATTAATGTAGAAGACCATGACGTCGCAAATGGACTTTCCCACACATCACCCAAGAAGCAGATACACAAGAAGAAAAAACCCAGAACGCTGGAAGATAACGGGGTAGAGGAAACGTCACAGTCACTGTCACAGGCTACAGGGTTAACCCAGGCCAAGAAGAAGAAGAAGAAGACACACAAGAAGAAAAAACCCAGAACAGTGGAAGATAACGGTGTAGAGGAAACGTCACAGTCACTGTCACAGGCTACGGGTTTAACCCAGGCCGATACAACTACTAGTCAAGACAATTATGAGGTTCCTACAAAGGTTTATGTTGGAGGAATTCCCTACTATTCAACCGAGGATGATATTCGAAGTTATTTTGAAAGTTGTGGCACCATAACTGAAGTTGATTGCATGACTTTCCTGAAACTGCCAAGTTTAGAGGGATTGCCATTATTAGTTTTAAGGTCAACAGAAGCAGCAGTCAAAAGAGCATTGGCTCTCGATGGAGCTGACATGGGAGGACTCTTTCTTAAAATCCAACCATATAAAGCAACTCGAGCCAATAAAGCATCCGATTTTGCTCCGGAAATTTTGGAGGGATACAATAGAATATATGTTGGAAATTTATCGTGGGATATAACAGAGGAAGAACTAAGGAAATTCTTCAAAAATTGTGAGATTACGTCGCTCCGATTTGGTATGGACAAGGAGACAGGAGAATTTCGAGGGTATGCCCATGTGGATTTCAGTGATAGTCAATCTCTGAAGACAGCACTTACATTGGATCAAAATGTTTTGTTTGGAAGACCTATCAGGATAAGTTGTGCAGTTCCTTTGAAGAAAAAGCCAGGAACTCATACAAGCTCTGTGTCCACACTCAATGGAGCTGATGGTGATAAATCAATTTCCCCTGGAAGTGGTAAGATGAAGAGGAGGACATGCTATGAGTGTGGTGAGAAAGGACATGTTTTTTCTGCATGCCCAAAGAAACAAACAGTTGCTGCAACTCCAACTTAAAACATGTAGGAAAACTCAAACAGATCACAGTTCTTGATTCTTCTTGCAGAAAGTTTGATTGTAGTTTATAAAATACAATACCACTGCATTCATTATTGATCGGGTTGACAGTTTCCTACTTCCGTTATTATTATTATTATCATTTTTTTCCCTCTTCAAATGATAATATTGTCCATGGTATAAGTAAAGAAAGTAGGAGATTAAAATGTTACTAGTAGTTTGAGATTTTGTTCACGGATAGATCAACAAATTTATGTGAATTAATGCCAAAGCCAAAATTTCTTTTTGTTGCAAATCTTATCCTTGACTGGCTTTTGCACATTTTTTTCGATGATGATTATTTACAAGGGAGTAATTTTGTAGCTTTGTTCTTA 1825 0.4082 MVLSNKKLKLKLRAELAQQQNQIGAEAPSSSHSLKTLLDSARLSKREKRRKLRSSQPFNQKRKINVEDHDVANGLSHTSPKKQIHKKKKPRTLEDNGVEETSQSLSQATGLTQAKKKKKKTHKKKKPRTVEDNGVEETSQSLSQATGLTQADTTTSQDNYEVPTKVYVGGIPYYSTEDDIRSYFESCGTITEVDCMTFLKLPSLEGLPLLVLRSTEAAVKRALALDGADMGGLFLKIQPYKATRANKASDFAPEILEGYNRIYVGNLSWDITEEELRKFFKNCEITSLRFGMDKETGEFRGYAHVDFSDSQSLKTALTLDQNVLFGRPIRISCAVPLKKKPGTHTSSVSTLNGADGDKSISPGSGKMKRRTCYECGEKGHVFSACPKKQTVAATPT 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g00268 396 MobiDBLite consensus disorder prediction 19 157 - -
Pste4g00268 396 SUPERFAMILY RNA-binding domain, RBD 150 246 IPR035979 GO:0003676
Pste4g00268 396 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 164 242 IPR000504 GO:0003723
Pste4g00268 396 SUPERFAMILY RNA-binding domain, RBD 253 363 IPR035979 GO:0003676
Pste4g00268 396 SMART rrm1_1 165 238 IPR000504 GO:0003723
Pste4g00268 396 SMART rrm1_1 261 332 IPR000504 GO:0003723
Pste4g00268 396 Gene3D - 91 250 IPR012677 -
Pste4g00268 396 MobiDBLite consensus disorder prediction 339 367 - -
Pste4g00268 396 MobiDBLite consensus disorder prediction 342 357 - -
Pste4g00268 396 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 262 330 IPR000504 GO:0003723
Pste4g00268 396 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 166 197 IPR000504 GO:0003723
Pste4g00268 396 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 260 336 IPR000504 GO:0003723
Pste4g00268 396 ProSiteProfiles Zinc finger CCHC-type profile. 372 387 IPR001878 GO:0003676|GO:0008270
Pste4g00268 396 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 83 237 - -
Pste4g00268 396 MobiDBLite consensus disorder prediction 97 112 - -
Pste4g00268 396 MobiDBLite consensus disorder prediction 19 38 - -
Pste4g00268 396 SUPERFAMILY Retrovirus zinc finger-like domains 361 390 IPR036875 GO:0003676|GO:0008270
Pste4g00268 396 Gene3D - 350 396 - -
Pste4g00268 396 MobiDBLite consensus disorder prediction 134 157 - -
Pste4g00268 396 Gene3D - 256 343 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g00268 Pste-Chr4 2188209 2190661 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g00268 262 332 Eukaryotic Initiation Factors Gene Family AT2G23350 31.507 2.55e-06 47.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste4g00268 4 2188209 2190661 Pste4g00268 4 2188209 2190661 ECH