LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste4g00254	ATGATGGTAGCAGCGTCCGGTGCAACTGAGAGGCCTGTCAGCCCTGATGTTTCAAGTGAAGAAAATGATCATCATGAAGAAGCACAGGATGACACTTGTGGAACCAAACGGTCTTATGAGTGCACATTCTGCAAAAGAGGCTTTACAAACGCTCAGGCTTTAGGGGGTCATATGAATATTCATAGGAAAGACAGGGCCAAGGCCAAACAATTCACACTAGATGCTTCACCTTCAATTAACAAATTCAACAGTGATGAATCCATGGCCCTTCCTTTTGTCTCAGAAATTTTAAACCACCCCCCCATTAGGCCTAATTATTCCATTTTGGAGTCTCAGAGGAACTGTGACATGCACTTTCATCCACCAGCACCAGCGCATGCCTTTTATTATGAGTTTTGTAACTCAAGGTCTCGGCCTTTGAGTTTCAACCAAGAGCTTCGGGGTGCTAATTTGAGTCTCCAAATTGGTCCAAGTCATGTTGATGATAATATTCATCAAGTCCGAAGAGGAAATCAGAAAGAGAGTGAAGTGGACTTGGAGCTTAGACTTGGCCATGATCCATACTGA	567	0.4374	MMVAASGATERPVSPDVSSEENDHHEEAQDDTCGTKRSYECTFCKRGFTNAQALGGHMNIHRKDRAKAKQFTLDASPSINKFNSDESMALPFVSEILNHPPIRPNYSILESQRNCDMHFHPPAPAHAFYYEFCNSRSRPLSFNQELRGANLSLQIGPSHVDDNIHQVRRGNQKESEVDLELRLGHDPY	188

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste4g00254	188	ProSitePatterns	Zinc finger C2H2 type domain signature.	41	61	IPR013087	-
	Pste4g00254	188	Gene3D	Classic Zinc Finger	17	90	-	-
	Pste4g00254	188	MobiDBLite	consensus disorder prediction	1	32	-	-
	Pste4g00254	188	SMART	c2h2final6	39	61	IPR013087	-
	Pste4g00254	188	SUPERFAMILY	beta-beta-alpha zinc fingers	36	65	IPR036236	-
	Pste4g00254	188	PANTHER	OS07G0101800 PROTEIN	20	186	-	-
	Pste4g00254	188	MobiDBLite	consensus disorder prediction	16	32	-	-
	Pste4g00254	188	Pfam	C2H2-type zinc finger	39	63	-	-
	Pste4g00254	188	ProSiteProfiles	Zinc finger C2H2 type domain profile.	39	66	IPR013087	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste4g00254	Pste-Chr4	2104463	2107584	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste4g00254	30	97	C2H2 Transcription Factor Family	AT3G09290	50.000	1.27e-16	72.0

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C2H2	Pste4g00254		zf-C2H2_6	1.9e-05	CL0361