Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pste4g00235 | TGTTTTGAGGTTGGTACCATAATTGAAAAAGAAGAAGAAGAAGAGTTATCGGGAGTGCTAAGAAAGCCGTTGGACTTGGAGGATGCCATTGGCTGTTCCAAGAACAGAGAAGGAACTCACAAGGAAAAGATAAAAAATAAAACAACACTATCCAATTTACTTAAAATTGAGAGGATGGAGGAGAAGAAGGAGAGAGGAATGGAAGAGGAAGAGGGTAAGACTATGAGTCGAAAGGAGAAGAGAAAGGCAATGAAGAAAATGAAGCGGAAGCAGGTGAGGAAGGAGGCAGCAGAGAGGGAACGGCAGGAGGAAGAGGAACGCCTCAATGATCCGGAGGAGCAGAGGAGGATGCAGTTGTTGGAGCAGCAGGAGGCTGAAAGAATGCAAAGGGACAGGATCCTCTTCCAGGAGAGAGAGAAGGCATGGATGGACATGCTCATCACCCGAAAACAACAAGAACAGTTGCAATGCCAACAAGAAGAAGAAAGCGATGAATATGAATGCGTGGAGGAAGAAGGCCCTCCAGTGATTATTTGGCAAGGAAATGAGATCATCTTCAAGAAGAAACAACTTAGAGTTAGGGTTATCGACAGGGACAAGCCCAAGCTCGACAGGGACAAGCCCAAGCTCAACGACACTGATCAAAACAACCACCAGCATGAGGATGAGGATACTAGACCTACATCCAATCCCCTGCCCCCAGAATCAGGATTGGAGTCACACACTCAGACACTCCACAACGTTGCTCAACAAATACCCAATTTCGGAACTGAACAGGATAAAGCTCACTGCCCTTTTCATCTCAAAACGGGAGCATGTCGTTTTGGTATGCGCTGTAGCAGGGTCCATTTTTACCCCGATAAATCTTGCACCCTTCTTATCAAAAACATGTACAACGGTCCTGGCCTTGCTTGCGATCGTGACCAAGATGAGGGGCTTGAGAGATTTGTTCCAAGATGCATTTTGGTGGAGGCTAATGATTTTGGCCTTTGCTCGTCAATTTTAAAGACATTGACTGTTTTGTCAGGCATTATTGGAATCTTGGCTTATGGAGCTTTGTTGCAGACTAATGGTCATGACCTTCAAAGGTATACAGATGAAGAAGTTGATCGCTGTTTTGAAGAATTTTATGAGGATGTTCACACAGAGTTCTTGAAGTTTGGGGAAATTGTTAACTTCAAGGTGTGTAAAAATGGTTCATTTCACTTGCGAGGAAATGTCTATGTTCAGTATAAATCGTTGGATTCTGCTCTGCTTGCTTATAATTCAGTGAATGGTCGCTACTTTGCTGCAAAACAGGTAAGTTGTCAATTTGTCAACTTGACAAGATGGAAGGTTGCTATATGTGGCGAGTATATGAAATCTGGTTTCAAGACTTGTTCTCATGGAACAGCATGCAATTTTATCCATTGCTTTCGTAATCCTGGTGGAGACTATGAATGGGCCGATTCTGATAAACCTCCCCCTAAATATTGGGTAAAAAAGATGGTTGCTTTATTTGGTTATTCTGACAATTATGAGACTTTAAGGGACCATGGAAATTTGAGTTTGTCAAGAACAGATTCTGACAGGCACCGCTCTAGAAGGTCAAGATCTAGGGAGATAGATCAGTTAACTTGTGGTAATTCTGGAAGAAGAAAACAAGATGAAAGAAAGCAAAGAACTCCTGATGAGGATCAGAATGCCAACTTTGAAAACAATAATAAAAGCAAATCCAGAGACATAACTCCTGATACTGATTCTGACAAGGAACGGTTAGAAAAAGAGGAAAATATGGGAAGATACTCATTTAACAAGAACAAGGATGATAATATCAGAAGCCATGAGGATTCTGATGAGGATTGGGATACAAGGGACAACGGAAAACAGCTTTGCAGAGAAGGAAGAAACTCTAGTAGGGTCAGGATTTACGAGACTATATCAGATGGGAATAGAGATGAGAAAAGGCACCATATTAGCAAAAGCACAAGATATCAGAGTGGCGATGCTTCTGAATCTGCCAAAGATTTGCTTGGTGGAGAGATGGAGCCAAGACATGATTACCGTAGGAAAAGTTCGAGACACAGAAGATCTGGCCTTAAGGATGACTATAGATACTATGAGAAAGAAAGAGACAAAGTTGATGGAGATTGGTCTCGTTGGGAGAGTCACAAACGAGAACATCATCACAAAAAGAAAAGATCAAAACATTAACGAGATGCCAAGTCGGAAGCAATAGAGTGGATCTGTTAGAACCAAGTCATAGAAACAATGGGAATGGAAGTGATAATTGATACCTTTTCTTGACAAAGATGCCATATCTCCTGTCATTTTATAATGACAATTTCGACTCTCT | 2335 | 0.418 | CFEVGTIIEKEEEEELSGVLRKPLDLEDAIGCSKNREGTHKEKIKNKTTLSNLLKIERMEEKKERGMEEEEGKTMSRKEKRKAMKKMKRKQVRKEAAERERQEEEERLNDPEEQRRMQLLEQQEAERMQRDRILFQEREKAWMDMLITRKQQEQLQCQQEEESDEYECVEEEGPPVIIWQGNEIIFKKKQLRVRVIDRDKPKLDRDKPKLNDTDQNNHQHEDEDTRPTSNPLPPESGLESHTQTLHNVAQQIPNFGTEQDKAHCPFHLKTGACRFGMRCSRVHFYPDKSCTLLIKNMYNGPGLACDRDQDEGLERFVPRCILVEANDFGLCSSILKTLTVLSGIIGILAYGALLQTNGHDLQRYTDEEVDRCFEEFYEDVHTEFLKFGEIVNFKVCKNGSFHLRGNVYVQYKSLDSALLAYNSVNGRYFAAKQVSCQFVNLTRWKVAICGEYMKSGFKTCSHGTACNFIHCFRNPGGDYEWADSDKPPPKYWVKKMVALFGYSDNYETLRDHGNLSLSRTDSDRHRSRRSRSREIDQLTCGNSGRRKQDERKQRTPDEDQNANFENNNKSKSRDITPDTDSDKERLEKEENMGRYSFNKNKDDNIRSHEDSDEDWDTRDNGKQLCREGRNSSRVRIYETISDGNRDEKRHHISKSTRYQSGDASESAKDLLGGEMEPRHDYRRKSSRHRRSGLKDDYRYYEKERDKVDGDWSRWESHKREHHHKKKRSKH | 730 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pste4g00235 | 730 | MobiDBLite | consensus disorder prediction | 690 | 717 | - | - | |
| Pste4g00235 | 730 | Coils | Coil | 80 | 114 | - | - | |
| Pste4g00235 | 730 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 378 | 433 | IPR000504 | GO:0003723 | |
| Pste4g00235 | 730 | MobiDBLite | consensus disorder prediction | 199 | 228 | - | - | |
| Pste4g00235 | 730 | MobiDBLite | consensus disorder prediction | 37 | 78 | - | - | |
| Pste4g00235 | 730 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 346 | 441 | IPR000504 | GO:0003723 | |
| Pste4g00235 | 730 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 263 | 283 | IPR000571 | GO:0046872 | |
| Pste4g00235 | 730 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 444 | 471 | IPR000571 | GO:0046872 | |
| Pste4g00235 | 730 | FunFam | Zinc finger CCCH domain-containing protein 5 | 347 | 439 | - | - | |
| Pste4g00235 | 730 | MobiDBLite | consensus disorder prediction | 571 | 656 | - | - | |
| Pste4g00235 | 730 | MobiDBLite | consensus disorder prediction | 37 | 114 | - | - | |
| Pste4g00235 | 730 | Coils | Coil | 152 | 172 | - | - | |
| Pste4g00235 | 730 | MobiDBLite | consensus disorder prediction | 513 | 730 | - | - | |
| Pste4g00235 | 730 | MobiDBLite | consensus disorder prediction | 543 | 559 | - | - | |
| Pste4g00235 | 730 | ProSiteProfiles | Zinc finger C3H1-type profile. | 258 | 286 | IPR000571 | GO:0046872 | |
| Pste4g00235 | 730 | PRINTS | U2 auxiliary factor small subunit signature | 398 | 420 | IPR009145 | GO:0000398|GO:0003723|GO:0089701 | |
| Pste4g00235 | 730 | PRINTS | U2 auxiliary factor small subunit signature | 425 | 449 | IPR009145 | GO:0000398|GO:0003723|GO:0089701 | |
| Pste4g00235 | 730 | PRINTS | U2 auxiliary factor small subunit signature | 283 | 303 | IPR009145 | GO:0000398|GO:0003723|GO:0089701 | |
| Pste4g00235 | 730 | PRINTS | U2 auxiliary factor small subunit signature | 463 | 475 | IPR009145 | GO:0000398|GO:0003723|GO:0089701 | |
| Pste4g00235 | 730 | PRINTS | U2 auxiliary factor small subunit signature | 264 | 283 | IPR009145 | GO:0000398|GO:0003723|GO:0089701 | |
| Pste4g00235 | 730 | SUPERFAMILY | RNA-binding domain, RBD | 373 | 441 | IPR035979 | GO:0003676 | |
| Pste4g00235 | 730 | ProSiteProfiles | Zinc finger C3H1-type profile. | 443 | 473 | IPR000571 | GO:0046872 | |
| Pste4g00235 | 730 | PANTHER | U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT | 254 | 649 | IPR009145 | GO:0000398|GO:0003723|GO:0089701 | |
| Pste4g00235 | 730 | MobiDBLite | consensus disorder prediction | 514 | 535 | - | - | |
| Pste4g00235 | 730 | MobiDBLite | consensus disorder prediction | 199 | 240 | - | - | |
| Pste4g00235 | 730 | SMART | rrm2_1 | 367 | 437 | IPR003954 | GO:0003676 | |
| Pste4g00235 | 730 | MobiDBLite | consensus disorder prediction | 91 | 114 | - | - | |
| Pste4g00235 | 730 | Gene3D | - | 289 | 439 | IPR012677 | - | |
| Pste4g00235 | 730 | SMART | c3hfinal6 | 443 | 472 | IPR000571 | GO:0046872 | |
| Pste4g00235 | 730 | SMART | c3hfinal6 | 259 | 285 | IPR000571 | GO:0046872 |
Transcription factors information