Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g00228 ATAAAAAGTGGAAAGGGTGAGTTGAAGAATATGGCGGAGATGCAGATGCAGAAGAAGAAGCAGATGCTACCATACACGGACGTTGATTCGAGCTTAAGGTCCTTGGCCGGTAGTGCTGAGGGTTTCGGGCGGCTTTCCATTGGTGGCCTCCACGGTCCTCTCTACGTTGTTAGCACTCTTTCAGATGATGGCCCTGGGTCCCTTCGCGATGGATGCCGTCGAAAGGAACCCTTATGGATTGTTTTTGAGGTTTCCGGTTGCATTCATCTCTCCTCCTATCTCTCCGTGTCCTCCTATAAGACCATCGATGGTCGCGGGCAGAGGGTTAAACTGACCGGTAAGGGTTTGAGGCTTAAGGAATGTCAGCACGTTATCGTCTGCAACCTCGAGTTTGAGTGTGGCAGAGGTCACGATGTGGACGCCATTCAAATCAAACCTAATTCCCGACATATTTGGATTGATCGTTGCTCCCTTCGTGATTATGATGATGGCCTCATTGACATTACTAGACAAAGCACCGATATCACTGTCTCTCGGTGTTACTTTGCAAACCATGACAAGACCATGCTCATTGGAGCTGACCCCTCTCACGTTGCTGATCGATGCATCCGCGTCACCATTCACCATTGTTTCTTTCATTCAACTCGCCAAAGACAACCCCGTGTCCGTTTTGGAAAGGTCCATCTCTTCAACAATTACACCACCAACTGGGATGTATATGCTGTTTGTGCTAGTGTCGAATCCCAGGTCCTTCCCTTTTTTTCTTTCCCTTCCAACTCCTCTCCATCTCCATCTTCATCCTCATCATTTCTTCTATATCATACCATTTCACAGATATACTCTCAATGTAACGTCTATGAAGCAGGAACTAAGAAAAAGACTTTTGAATTTTATTCTGAGAAGGCAGCAGATAAGGAAGAGCACAAGTCTGGCTTCATAATATCAGAAGGAGACATGTTTCTGAATGGTGCTGAGCCATGCTTGCTTACAGAAAACAAAGGAGAGGCAATGTTCCATCCTAGCGAATATTACCCAACATGGACAATGGAAGCAGCTGCACATTCTCTCAAAGAGGTGCTCCAGTTATGTACAGGTTGGCAATCCATTTGTAGGCCAGTAGATCATATGGTCCTTCAATAA 1140 0.4605 IKSGKGELKNMAEMQMQKKKQMLPYTDVDSSLRSLAGSAEGFGRLSIGGLHGPLYVVSTLSDDGPGSLRDGCRRKEPLWIVFEVSGCIHLSSYLSVSSYKTIDGRGQRVKLTGKGLRLKECQHVIVCNLEFECGRGHDVDAIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFANHDKTMLIGADPSHVADRCIRVTIHHCFFHSTRQRQPRVRFGKVHLFNNYTTNWDVYAVCASVESQVLPFFSFPSNSSPSPSSSSSFLLYHTISQIYSQCNVYEAGTKKKTFEFYSEKAADKEEHKSGFIISEGDMFLNGAEPCLLTENKGEAMFHPSEYYPTWTMEAAAHSLKEVLQLCTGWQSICRPVDHMVLQ 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g00228 379 Gene3D - 24 364 IPR012334 -
Pste4g00228 379 PRINTS Pollen allergen Amb family signature 218 237 IPR018082 -
Pste4g00228 379 PRINTS Pollen allergen Amb family signature 38 55 IPR018082 -
Pste4g00228 379 Pfam Pectate lyase 94 249 IPR002022 -
Pste4g00228 379 PANTHER PECTATE LYASE 18-RELATED 26 251 IPR045032 GO:0030570
Pste4g00228 379 SUPERFAMILY Pectin lyase-like 36 374 IPR011050 -
Pste4g00228 379 SMART amb_all 85 260 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g00228 Pste-Chr4 1901605 1903189 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g00228 62 377 Polysaccharide Lyase AT3G55140 71.519 8.21e-174 484