Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g00184 ATGGATTCTCCCTCCTTCTTCAACTCACCCACTTCCGATTTGTCCTCGGAATCTTCCTCTCCAGAGGCCTTCTCCTGGGAAGGGTATCTCCCCTTCAACGAGAACGACCCAGAGGAGATGCTTTTATACGGCATGATCGCAGGGGCCAGCTCCATCGACCACTCCGGCCACAGACCCAGTTCCGAGGCGGCGCGCAAGGAAAAGTCTTTCCGCGGCGTGCGGCGGCGTCCATGGGGCAAGTTCGCCGCCGAGATTAGGGACTCCACACGCCACGGGATGAGGGTCTGGCTCGGGACATTCGACAGCGCCGAAGCTGCCGCCTTGGCTTACGACCAAGCCGCTTTCTCCATGCGCGGTTCCGCCGCGATTCTCAACTTCCCCGTTGAGACCGTTAGGGAGTCACTCAGAGAGATGAATTACACGCACGACACCAGCGAGGAAGGCTGCTCCCCTGTTATTGCTCTCAAGCGGAAGCACTCCTTAAGAAGGAAAATTAATGTGAAGAAGAACAGCAAACAAAATTCTACGGTAGACAATGCTGTCGTGTTTGAAGACCTCGGTCCTGATTACTTGGAACAGTTGTTGATTTCCTCTGATCATGTTCCCACCTCCTTCTGA 618 0.5518 MDSPSFFNSPTSDLSSESSSPEAFSWEGYLPFNENDPEEMLLYGMIAGASSIDHSGHRPSSEAARKEKSFRGVRRRPWGKFAAEIRDSTRHGMRVWLGTFDSAEAAALAYDQAAFSMRGSAAILNFPVETVRESLREMNYTHDTSEEGCSPVIALKRKHSLRRKINVKKNSKQNSTVDNAVVFEDLGPDYLEQLLISSDHVPTSF 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g00184 205 FunFam Ethylene-responsive transcription factor 2 68 129 - -
Pste4g00184 205 Gene3D AP2/ERF domain 68 129 IPR036955 GO:0003700|GO:0006355
Pste4g00184 205 PANTHER DNA-BINDING DOMAIN 47 196 IPR044808 GO:0003700|GO:0009873
Pste4g00184 205 SMART rav1_2 69 133 IPR001471 GO:0003700|GO:0006355
Pste4g00184 205 Pfam AP2 domain 70 119 IPR001471 GO:0003700|GO:0006355
Pste4g00184 205 MobiDBLite consensus disorder prediction 1 23 - -
Pste4g00184 205 ProSiteProfiles AP2/ERF domain profile. 69 127 IPR001471 GO:0003700|GO:0006355
Pste4g00184 205 CDD AP2 68 128 IPR001471 GO:0003700|GO:0006355
Pste4g00184 205 PRINTS Ethylene responsive element binding protein signature 70 81 IPR001471 GO:0003700|GO:0006355
Pste4g00184 205 PRINTS Ethylene responsive element binding protein signature 93 109 IPR001471 GO:0003700|GO:0006355
Pste4g00184 205 SUPERFAMILY DNA-binding domain 70 129 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g00184 Pste-Chr4 1545513 1546130 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g00184 30 203 AP2-EREBP Transcription Factor Family AT3G23240 61.081 2.08e-72 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Pste4g00184 AP2 1.4e-14 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste4g01891 4 14079978 14080456 Pste4g00184 4 1545513 1546130 ECH
Pste4g00184 4 1545513 1546130 Pste4g00184 4 1545513 1546130 ECH