Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g00177 ATGGAGGAGCACCAGAAAGGGAAGGAAGAGGTGCGGTACCGCGGCGTGAGGCGGAGGCCGTGGGGGAAGTACGCGGCGGAGATAAGGGATCCATCAAAGCAAGGGTCGAGGCTGTGGTTGGGGACATTTGACACTGCTGAAGAAGCTGCTAGAGCTTATGATCGTGCTGCTTTTAACCTAAGGGGTCATCTTGCAATTCTCAACTTTCCTACTGAGTACTATTCTCAAATAAGGGGTTCACCGCCATATCCTCCTCATTTGGCACCAGCACCACCCTCTTCCGCTTCTCATGCCACTCCCAGCACTTCTTCTGCTGCACAGCAAAGGCACGTTTTCGAGATTCCGTGTTTGGATGATAAGGTCTTGGAAGATCTTCTTGGTCAATCTGAGGACCACAAGAACAAAAACAAGTCAGATTGA 420 0.5095 MEEHQKGKEEVRYRGVRRRPWGKYAAEIRDPSKQGSRLWLGTFDTAEEAARAYDRAAFNLRGHLAILNFPTEYYSQIRGSPPYPPHLAPAPPSSASHATPSTSSAAQQRHVFEIPCLDDKVLEDLLGQSEDHKNKNKSD 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g00177 139 PANTHER DNA-BINDING DOMAIN 4 113 IPR044808 GO:0003700|GO:0009873
Pste4g00177 139 SMART rav1_2 12 76 IPR001471 GO:0003700|GO:0006355
Pste4g00177 139 CDD AP2 12 70 IPR001471 GO:0003700|GO:0006355
Pste4g00177 139 Gene3D AP2/ERF domain 11 72 IPR036955 GO:0003700|GO:0006355
Pste4g00177 139 PRINTS Ethylene responsive element binding protein signature 36 52 IPR001471 GO:0003700|GO:0006355
Pste4g00177 139 PRINTS Ethylene responsive element binding protein signature 13 24 IPR001471 GO:0003700|GO:0006355
Pste4g00177 139 FunFam Ethylene-responsive transcription factor 2 11 72 - -
Pste4g00177 139 SUPERFAMILY DNA-binding domain 12 72 IPR016177 GO:0003677
Pste4g00177 139 Pfam AP2 domain 12 63 IPR001471 GO:0003700|GO:0006355
Pste4g00177 139 MobiDBLite consensus disorder prediction 78 110 - -
Pste4g00177 139 ProSiteProfiles AP2/ERF domain profile. 12 70 IPR001471 GO:0003700|GO:0006355
Pste4g00177 139 MobiDBLite consensus disorder prediction 94 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g00177 Pste-Chr4 1484345 1484764 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g00177 9 130 AP2-EREBP Transcription Factor Family AT3G23230 64.754 1.84e-48 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pste4g00177 AP2 5.1e-17 CL0081