Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g00175 ATGGATCTTCTAAGCAGAAGATACTTGATTTATGTGTCACAACATGAGTCACAATCACAAGCACTTTCTCCAATCACAACTCCAGGGAGTTCAATCTTTCATCCTCATCAGCATTCTTCTAGCACCAGTTTTCCCATCATTGCAATTGCTATAATAGGTATAATGGCAACAGCTTTCTTGCTCGTGAGCTACTACATCTTTGTGATCAAATGCTGCCTCAATTGGCACCGAATTGATGTTCTTAGACGTTTCTCTCCATCTAGAAGGCGTGAAGATCCGTTACCAGTATACTCACCAGGCACGGAAACTCGTGGACTAGATGAGGCACTGATCCGGTTAATCCCAGTGTTTCAATACAAAACACAAGGGGATAAAGACTTTGGAGAAAGAAGATTTTGTGAATGTGCTGTTTGTTTAAATGAGTTTCAAGAAGATGAGAAGCTCAGGATTATACCAAACTGCAGCCATGTGTTTCACATTGATTGCATAGATGTCTGGCTTCAGAGCAGTGCTAATTGCCCTCTTTGTAGAACAAGCATTTCCTTGACAAGCAGATTCCACATTGACCAGCTTCTCAGCCTAAGGCCATCTTCCCCCTTGGATCAAACCCCAACTGGGGAAAACCTCATTGGAGGTGATGAAGATTTTGTTGTGATTGAATTGGGCAATGATCATGATAGAAGCCAAAATTTGCAAGAAAGAGGCAATGCTTTGCAGTTACCATTACCAACATGTCTTATTAGTCCTTCTTCGCCAAGGAAATTGGAACATGGAAATGTGCAGAAGAAAGCAATGAAACTGCATAAAGTGACAAGCATGGGGGATGAGTGTATTGACATTAGAGCCAAAGATGACCAGTTTTCAGTCCAACCAATCAGGAGGTCTTTCTCCATGGATTCATCAGGGGATAGACAATTCTATCTAGCGGTTCAAGAAGCACTGAGGCTTCAGAACAGGCAAGTCAATGAGGTTAGCTCCATTGAAGGTTGCAGTGGTAGTGGTAGAGCCAAGAGATCATTCTTTTCCTTTGGACATGGAAATAGATCCAGGAGTTCTGTGCAACCTGTTTCTTTAGACCCCTGA 1083 0.4238 MDLLSRRYLIYVSQHESQSQALSPITTPGSSIFHPHQHSSSTSFPIIAIAIIGIMATAFLLVSYYIFVIKCCLNWHRIDVLRRFSPSRRREDPLPVYSPGTETRGLDEALIRLIPVFQYKTQGDKDFGERRFCECAVCLNEFQEDEKLRIIPNCSHVFHIDCIDVWLQSSANCPLCRTSISLTSRFHIDQLLSLRPSSPLDQTPTGENLIGGDEDFVVIELGNDHDRSQNLQERGNALQLPLPTCLISPSSPRKLEHGNVQKKAMKLHKVTSMGDECIDIRAKDDQFSVQPIRRSFSMDSSGDRQFYLAVQEALRLQNRQVNEVSSIEGCSGSGRAKRSFFSFGHGNRSRSSVQPVSLDP 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g00175 360 CDD RING-H2_EL5-like 134 177 - -
Pste4g00175 360 PANTHER RING-H2 FINGER PROTEIN ATL16 31 356 IPR044600 GO:0016567|GO:0016740
Pste4g00175 360 Pfam Ring finger domain 134 177 IPR001841 -
Pste4g00175 360 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 98 182 IPR013083 -
Pste4g00175 360 SMART ring_2 135 176 IPR001841 -
Pste4g00175 360 ProSiteProfiles Zinc finger RING-type profile. 135 177 IPR001841 -
Pste4g00175 360 FunFam E3 ubiquitin-protein ligase ATL6 97 183 - -
Pste4g00175 360 SUPERFAMILY RING/U-box 121 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g00175 Pste-Chr4 1447552 1448634 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g00175 35 360 C3H Transcription Factor Family AT1G04360 53.056 2.22e-106 315
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste4g00175 4 1447552 1448634 Pste4g00175 4 1447552 1448634 ECH