Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g00164 ATGGCATCAACATCTTGCGTTGGTAACAGCTCATTATCCATGAAAGATGCAGCTTCGAGTTCGAGCTATCGTGCATATCCTTTTCCTCTAGCTAAATACGAGGATGTTGTGGACAATCCCCAACTCTTCATGTTTACCTTGGAGAAACTTCACGCTTCTATGGGTACCAAGTTCATGATTCCCATTGTTGGAGGAAGAGAACTAGATTTGCACCGCCTCTTTGTTGAAGTGACTTCTCGTGGAGGGATTGCCAAAATAATTAGAGAGAGGAAATGGAAAGATGTGACTTCAGTGTTCAATTTTCCATCAACAGCTACAAATGCTTCTTTTGTATTGCGGAAGTACTATGCTTCATTGCTCTACCATTATGAGCAAATCTACTATTTTAAAGCCCGTGAATGGGACCCTACTGCTCCTGATGTTTTGCAGAATCAATCGACCCTGCCAGTTCCTCCTCCAAAAATGCAGTTTCCGCAGCCTTTATCAGAAATTCAACCAGCTGGCTTTCAACAGTCAAATGCTAATGCTGCTAAATTACCTGAAGTAATGGCATCATCGTCGGCCGGGTCTCCAGTCATTGGGGTCATTGATGGGAAATTTGAAAGTGGGTATCTAGTTACTGTCACAATTGGTTCAGAGAAACTCAAAGGTGTACTTTATCAAGCTCCACAAAACCCTGTATTGCCAGGATCCCACTATAGTGGTGCAGCTAATACCAACAATGTTACTGCTCCATTGGGTGTTCATCGTCGGCGACGTAGGAAGAAATCAGAAATTAAAAGAAGAGATCCTGCTCATCCAAAACCCAACAGAAGTGGGTACAATTTCTTCTTTGCTGAGCAGCATGCAAGATTAAAGCTACTTCACCATGGAAAGGACAGAGAGATTAGTAGGATGATTGGTGAACTCTGGAACAAGTTAAAAGAATCAGAAAAGACGGTTTATCAAGAGAAGGCAATGAAGGATAAAGAAAGGTACAGAGCAGAAATGGAGGATTATCGAGAGAAACTGAAGATGGGCCAAGTTATCAGTGATGCTGTTCCACTTCAACAACGACTTCCTGAACCGGATATAGACATGTTGGATGTTGACATAAAAATAGATGAAGCTGAGGCAGATTCCCCTCAAACCCCAGAGGAGAGCAGTTCTGGTGGAAGTGACTATGAAGATTATAATAAAACTGCAGAGAGAGGCTTTGATATGGATACATTGCCTGTTATAGGAATGGGTGCAGAAACAAGCTATTTAGGTTCAGAAGAGAAGTCATCCAAGGGGGGTTTATGAGCTTCTCGAGGAGAGAGAGAGAGAGAGGGAGGTTAGATGGCACTAATTTTTAGCATACAGATTTTTCTTATGGTAATTTAGAATATGCAGTGGAGATTTGAGGTAGGATTAAGGGTGCAACGCTTACATGCTGGGTCACACAGTGCTTAACTGTGAGTTTTGTCATTTAAAAGTTTTAATTTCAGGTGTTCATGTTGGCTTTCATGCAATATTGCTATTGTACATTTGGCATGCTGACATGGATCATGGTAACCAGTTATTATTAGGCCTTTGGGGAGTCAGGATGTCCGCTTTTCCTATGTTATTAGGTCCACTGGTGACCATACAATAAATTGTTTAC 1624 0.4169 MASTSCVGNSSLSMKDAASSSSYRAYPFPLAKYEDVVDNPQLFMFTLEKLHASMGTKFMIPIVGGRELDLHRLFVEVTSRGGIAKIIRERKWKDVTSVFNFPSTATNASFVLRKYYASLLYHYEQIYYFKAREWDPTAPDVLQNQSTLPVPPPKMQFPQPLSEIQPAGFQQSNANAAKLPEVMASSSAGSPVIGVIDGKFESGYLVTVTIGSEKLKGVLYQAPQNPVLPGSHYSGAANTNNVTAPLGVHRRRRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKLLHHGKDREISRMIGELWNKLKESEKTVYQEKAMKDKERYRAEMEDYREKLKMGQVISDAVPLQQRLPEPDIDMLDVDIKIDEAEADSPQTPEESSSGGSDYEDYNKTAERGFDMDTLPVIGMGAETSYLGSEEKSSKGGL 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g00164 427 FunFam High mobility group B protein 15 31 144 - -
Pste4g00164 427 ProSiteProfiles ARID domain profile. 37 128 IPR001606 GO:0003677
Pste4g00164 427 CDD ARID_HMGB9-like 39 124 IPR045303 GO:0003677
Pste4g00164 427 SMART hmgende2 266 335 IPR009071 -
Pste4g00164 427 Pfam ARID/BRIGHT DNA binding domain 41 124 IPR001606 GO:0003677
Pste4g00164 427 SUPERFAMILY ARID-like 37 136 IPR036431 GO:0003677
Pste4g00164 427 Gene3D - 30 138 IPR036431 GO:0003677
Pste4g00164 427 SMART ARID_2 34 124 - -
Pste4g00164 427 Gene3D High mobility group box domain 251 345 IPR036910 -
Pste4g00164 427 SMART bright_3 38 129 IPR001606 GO:0003677
Pste4g00164 427 MobiDBLite consensus disorder prediction 369 405 - -
Pste4g00164 427 FunFam High mobility group B protein 15 249 344 - -
Pste4g00164 427 CDD HMG-box_AtHMGB9-like 267 333 - -
Pste4g00164 427 PRINTS High mobility group (HMG1/HMG2) protein signature 299 318 - -
Pste4g00164 427 PRINTS High mobility group (HMG1/HMG2) protein signature 318 338 - -
Pste4g00164 427 SUPERFAMILY HMG-box 255 338 IPR036910 -
Pste4g00164 427 Coils Coil 316 336 - -
Pste4g00164 427 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 267 334 IPR009071 -
Pste4g00164 427 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 3 383 - -
Pste4g00164 427 MobiDBLite consensus disorder prediction 247 273 - -
Pste4g00164 427 Pfam HMG (high mobility group) box 267 334 IPR009071 -
Pste4g00164 427 MobiDBLite consensus disorder prediction 247 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g00164 Pste-Chr4 1396581 1401128 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g00164 1 367 ARID Transcription Factor Family AT1G04880 60.995 2.60e-138 402
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Pste4g00164 ARID 5.5e-18 CL0123