Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g00134 ATGACAACAGCAGAAGAAACTTCAAACTTGGATCTCATACGCCAACACCTCTTAGGAGAAAACATCTCAGACCCCTTTTTCTCAAATCTCCTTCCTGTTAAACTTGAAGCCCCCTCTTCACTAGAATTTGATTTCACCTCATTTATTTCGGACAACACAAGCTTCTTCACTTTCCTTGAAGGCTATGATTTGGTAGCAGACATGGAGTTTGTTGATGAGAAGGTAGTGAAGTCTAATTCCACAGCAACAACCATCACTATCCCCTCTAAGGAATCACCAAAAAGCAGTGTTAACTCTCCTGAATCATTGGTGTTATCAGAAGAGAAGCCCAACAAGTCACAATATAATGAGGCAAAGCGTTATAGGGGTGTTAGGAGAAGGCCTTGGGGCAAGTTTGCTGCTGAAATTCGTGACCCTACAAGGAAAGGAACAAGGGTTTGGCTTGGCACTTTTGACAGTGAAATTGATGCTGCTAAGGCTTATGATTGTGCTGCTTTCAAGATGAGGGGTCAAAAGGCCATTCTGAATTTCCCTCTTGAGGCTGGTGTGTCTAATCCAAAGCCAAATAGTTGTGGCAGGAAAAGGAGAAGAGAGAGCCTTCAATTGGAGCTTCCACAAGTTCAAGTCCAAGTTCATCATAGTGTTTTCCTGAGAAAGTAA 660 0.4258 MTTAEETSNLDLIRQHLLGENISDPFFSNLLPVKLEAPSSLEFDFTSFISDNTSFFTFLEGYDLVADMEFVDEKVVKSNSTATTITIPSKESPKSSVNSPESLVLSEEKPNKSQYNEAKRYRGVRRRPWGKFAAEIRDPTRKGTRVWLGTFDSEIDAAKAYDCAAFKMRGQKAILNFPLEAGVSNPKPNSCGRKRRRESLQLELPQVQVQVHHSVFLRK 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g00134 219 PANTHER DNA-BINDING DOMAIN 95 189 IPR044808 GO:0003700|GO:0009873
Pste4g00134 219 PRINTS Ethylene responsive element binding protein signature 121 132 IPR001471 GO:0003700|GO:0006355
Pste4g00134 219 PRINTS Ethylene responsive element binding protein signature 160 180 IPR001471 GO:0003700|GO:0006355
Pste4g00134 219 Gene3D AP2/ERF domain 119 180 IPR036955 GO:0003700|GO:0006355
Pste4g00134 219 SUPERFAMILY DNA-binding domain 120 179 IPR016177 GO:0003677
Pste4g00134 219 MobiDBLite consensus disorder prediction 87 111 - -
Pste4g00134 219 Pfam AP2 domain 120 170 IPR001471 GO:0003700|GO:0006355
Pste4g00134 219 CDD AP2 119 178 IPR001471 GO:0003700|GO:0006355
Pste4g00134 219 ProSiteProfiles AP2/ERF domain profile. 120 178 IPR001471 GO:0003700|GO:0006355
Pste4g00134 219 FunFam Ethylene-responsive transcription factor 2 119 180 - -
Pste4g00134 219 MobiDBLite consensus disorder prediction 87 115 - -
Pste4g00134 219 SMART rav1_2 120 184 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g00134 Pste-Chr4 1272777 1273436 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g00134 117 208 AP2-EREBP Transcription Factor Family AT5G07580 66.304 3.09e-41 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pste4g00134 AP2 1.5e-14 CL0081