Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g00125 ATCCTTCAGCCCTCACCACTCCAAACCCTCTCTCTTCTCTTTCTTTCCCGTTCGTCCCCAAATCAAACCTAAATTTCCCACCTTCAACTCTTCTCCCCAAATCGACAACCACCAACTTCCATACATTTGTATTTATACATATATACATAAACAGAGAGGGAGAGGGATAATGGATTCGGATCAGGGCAAGCTTTTCATCGGTGGGATTTCGTGGGATACGACGGAGGAGAAGCTCAAGGAGCATTTTGGCAACTACGGCGACGTTGTCAGCACTTCCGTCATGCGGGAGAAGAACACTGGCAAGCCCAGGGGCTTCGGTTTCGTCGTTTTTGCAGATCCTACCATTCTAGATAGGGTTCTTGAGGACAAGCACGTCATAGATGGCAGAACGGTTGATGCCAAAAAGGCCTTCTCAAGAGAGGATCAACAAATTTCTGTCACCTCGAGAGGTGGAAATCCCAATTCTGGCATGAATTCGGGAAATGGAGGAAACATCAGAACTAAAAAGATATTTGTTGGAGGATTGCCTCCCACTCTGACTGAAGAAAAATTTCGTCAGTACTTTGAGTCTTATGGACATGTAACTGATGTAGTAGTCATGTATGACCAGAATACTGGACGGCCAAGAGGATTTGGGTTTATTTCATTTGATACTGAGGAGGCTGTTGATAGGGTTTTGCACAAATCATTTCATGATTTAAATGGTAAACAAGTTGAGGTAAAGCGTGCACTTCCCAAGGATGCCAATCCTGGTGCAAGTGGCCGCATGATGGGTGGTGCTGGAGGTGGTGGTGGAATTGGTGGGTATCAAGGGTATGGGGCATCTGGTGGCAACCAAAATGCATATGATGGTCGTATGGATTCTAGTAGGTATATGCAGCCTCAAAGTGCTGCTGGTGGATTCCCTCCTTATGGTTCCTCTGCCTATAGTGCTCCTGGCTATGGGTATGGTCCGGCTAATAATGGCATTGGTTATGGTGCATATGGAAGTTATGGTGGTGCCACTGCTGGGTATGGTGGACCTGCTGGTGCAACATATGGGAATCCTAATGTCCCTAATGCTGCTTATGCTGGTGGTCCACCAGGTGGCCCAAGGAGTTCATGGCCTGCTCAGGCTCCATCTGGTTATGGATCTATGGGCTATGGGAGCACTGCTCCTTGGGGTGCTCCAAGTGGCGGTGCTGGATCTGGAGGCGGTGGTCCAGGTTCAGCAACTGCAGGTCAGTCCCCTGGTGGAGCTGCTGGATATGGGAATCAAGGTTATGGATATGGTGGGTATGGTGGATATGGCGGAAGTGATAGTTCTTATGGAAATTCAAGTGCATATGGTACTGTTGGTGGGCGTACTGGTAGTGCTCCAAACAGTAGTGCTAGTGGTCCTGGTGGGAATGAATTAACAAGCAGTGGTGGCAGTGGAAGCTATATGGGAAGTGGTTATGGGGATGCAAATGGAAATGCAGGTTATGGAAACACTGCCTGGAGATCTGAACAAACTCATGCATCTGGAAATTATGGTACTCCTCAGGGAAATGGTGGGCAAGTTGGCTATGGTGGTGGCTATGGTGGTGCTCAGTCTCGACAAGCTCAACAGCAGTAATTTTGACAGTTGAATCTCTTGCTGGATCTTGAACTTCAACTTGAGGATCCCTGGCCTTTTAAAAGTCTTAAACCATGAGGTCACAATGAATTCTTCCAGCAGCAAAGGAGTGGCTCAAAGATCGATGTCAATACACAATGGGACTGGTTGGATTGCTTGAATCCCAGTAGTTTGCAGTATTTGCTTTTCTAGTTTATAATAAGTAGTATGGTTGAAGAGATACTAGATGATACTTTCTATTTAGTATTTATTTCTGCGTGTAGCTTTAATTTGTGTGCTTATGATTCTAGTTGATCTTGAATGGTCGGTTCTTGTAGCATTTAAGCTATAGTATCATATTTCACCTTATATGATGGTTTGATGCAGTTTATTATTATCTGAGTTGTCTTATTATATTAGTGTTTGAATTTTATTTTCTCTTTGTGCTCACTTTTGATTATTGTATAGACTCATACTTTAATTGTCATGACAATTAGAAATATGAAGATGTAGTCAAGCTATTTACTGATAGCAGTGGACACTTGGTTGATCACTTCGTAATGGATAGCGTAATGGTAGTGATAGTAAAAACTTTGAGGATGGCATAATCATTTTCCCCCTGTATTTGCACTTGTGTTGTACAGGAGGAGAGGTGCACGTGTATTGAAGTGGAGCCAAGTGTCCACTCATGGCTAAGGATTGAACTTTGGTCGTCATATTGTGTTTTTCTGGCCCAACGCGTCACCAAATTTGGAGATTCCTGCCTTTTCGTGTGATAAATCCCATAACTTTCAATCTGATGTGTGGTGGCTGACAAATTGTGAGAGTTAGCAGCGCATTGACTTAACAGTTGGCTGTGACTCATAAGAATTTTATCATGATTGTGTCCAGATGATTGATACTTTTGGTTCTGGCTTGTGTTTGAATATTCATGCTCCAGACAGTTACATGTTTGAAATATTTTACACTGTGATACGCAAAAATTTTAAGTAGAAGTTCCTCATTTTGTCTTCATTTGCTATCACTTATGGTTTCTTTTCAGTTTTTAGTTTTTGTTTTACCCTTTTAATTAGCACTGTTTTACATGGCAAGTGCTTTGATATACCTCTCAAG 2689 0.4314 MDSDQGKLFIGGISWDTTEEKLKEHFGNYGDVVSTSVMREKNTGKPRGFGFVVFADPTILDRVLEDKHVIDGRTVDAKKAFSREDQQISVTSRGGNPNSGMNSGNGGNIRTKKIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDTEEAVDRVLHKSFHDLNGKQVEVKRALPKDANPGASGRMMGGAGGGGGIGGYQGYGASGGNQNAYDGRMDSSRYMQPQSAAGGFPPYGSSAYSAPGYGYGPANNGIGYGAYGSYGGATAGYGGPAGATYGNPNVPNAAYAGGPPGGPRSSWPAQAPSGYGSMGYGSTAPWGAPSGGAGSGGGGPGSATAGQSPGGAAGYGNQGYGYGGYGGYGGSDSSYGNSSAYGTVGGRTGSAPNSSASGPGGNELTSSGGSGSYMGSGYGDANGNAGYGNTAWRSEQTHASGNYGTPQGNGGQVGYGGGYGGAQSRQAQQQ 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g00125 475 CDD RRM2_Hrp1p 113 190 - -
Pste4g00125 475 SMART rrm1_1 7 78 IPR000504 GO:0003723
Pste4g00125 475 SMART rrm1_1 113 185 IPR000504 GO:0003723
Pste4g00125 475 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Pste4g00125 475 MobiDBLite consensus disorder prediction 84 107 - -
Pste4g00125 475 MobiDBLite consensus disorder prediction 381 475 - -
Pste4g00125 475 MobiDBLite consensus disorder prediction 432 454 - -
Pste4g00125 475 MobiDBLite consensus disorder prediction 381 418 - -
Pste4g00125 475 Gene3D - 105 230 IPR012677 -
Pste4g00125 475 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Pste4g00125 475 SUPERFAMILY RNA-binding domain, RBD 111 220 IPR035979 GO:0003676
Pste4g00125 475 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 1 475 - -
Pste4g00125 475 FunFam Heterogeneous nuclear ribonucleoprotein 1 5 87 - -
Pste4g00125 475 Gene3D - 4 88 IPR012677 -
Pste4g00125 475 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 180 IPR000504 GO:0003723
Pste4g00125 475 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 75 IPR000504 GO:0003723
Pste4g00125 475 FunFam heterogeneous nuclear ribonucleoprotein 1 107 229 - -
Pste4g00125 475 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 189 IPR000504 GO:0003723
Pste4g00125 475 SUPERFAMILY RNA-binding domain, RBD 3 110 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g00125 Pste-Chr4 1205894 1209175 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g00125 8 200 Eukaryotic Initiation Factors Gene Family AT2G23350 25.500 5.52e-09 56.6