Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g00101 ATGATCCCAACGAAATTTGTGGACAAAGAAAGCTTACCAAATACTTTATGTCTTAAGACACCAAATGGGGTTGAATGGAACTTGAATTTGGAAAAATGTGATGACTATCTCTCTCTAGCTCACGGGCATATTTTGCGTTTCAGATGTGAAACAACTTACCATTTCAAGACTGCCTTTCAAAAGGAAAAGGTAAAATTTCTTCGAATAATCAAAGGAAATAAACTACTAGAGGCATATCAAATGAGAAGTGATAAGGATGTTAAGGTTGATGACAGCTTGATATTGCCAAAGAAGGTTCTGCATCATACTGACACAAAGTGCAAAGAAGAAGCAAATGCTATGGCTAATCAAGTTACAGCTCTACATAGAGCAAGTTCTTTCAAACCTTGTAATCCCTTCTTCATGGCTGTAATGCATCCATCATATGTCCTTTCTAATGTGAGTTTATCATTGAAGTTTTGTAAGAGACACATTGATTTTTGCAAGAAACAAAGAATTATTAACCTTCAACTGTTAAATGGGAGCCTTTGTCCTGCAAAGTACACCATAAACACTAAAGGCATTACTAGAATCACAAGTGGATGGAAGCTATTTGTCAAGCACAATAGCTTGAGAGTTGGTGATGTATGCACATTTGAACTCATTCATCCAACTCAACTAACCTTTCTTGTTAACGTCTTCAGAGAAATAGACACTTCTGGCCAAATTAGAAATGAAACCAAAACCATCTCGGCTTTGTATGATGCTAACTTT 753 0.3612 MIPTKFVDKESLPNTLCLKTPNGVEWNLNLEKCDDYLSLAHGHILRFRCETTYHFKTAFQKEKVKFLRIIKGNKLLEAYQMRSDKDVKVDDSLILPKKVLHHTDTKCKEEANAMANQVTALHRASSFKPCNPFFMAVMHPSYVLSNVSLSLKFCKRHIDFCKKQRIINLQLLNGSLCPAKYTINTKGITRITSGWKLFVKHNSLRVGDVCTFELIHPTQLTFLVNVFREIDTSGQIRNETKTISALYDANF 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g00101 251 ProSiteProfiles B3 DNA-binding domain profile. 191 230 IPR003340 GO:0003677
Pste4g00101 251 Gene3D - 113 232 IPR015300 -
Pste4g00101 251 SMART B3_2 134 230 IPR003340 GO:0003677
Pste4g00101 251 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 9 229 IPR044837 -
Pste4g00101 251 Pfam B3 DNA binding domain 134 229 IPR003340 GO:0003677
Pste4g00101 251 SUPERFAMILY DNA-binding pseudobarrel domain 127 228 IPR015300 -
Pste4g00101 251 CDD B3_DNA 132 228 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g00101 Pste-Chr4 1053378 1054610 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g00101 105 228 REM Transcription Factor Family AT1G49480 30.303 9.37e-11 58.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pste4g00101 B3 1.5e-14 CL0405