Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g00089 ATGATAAACATAAACAAGGAAAGTTCAGATTGTAGGCAAATGAAAAAGACATTATTAGAAGCAGGGGGGCATGAGGAGAAGAAAGCGTTTGAGAAGTTGAAAGGAGTTGTGCCTCAACAAAATGGGAACTGGGGTGCCCAGATATATGCAAACCACCAAAGAATATGGTTGGGGACTTTCAAAACACAAAGAGAGGCTGCAATGGCTTATGACAGCGCCAGCATAAAACTGAGAAGCGGAGAAAGCCACAGAAACTTTCCATGGAGCGATCAAACAGTGGAAGAGCCTCATTTTCAAAGCCATTATAGCGCAGAGGCAGTGGTGAGCATGATTAGAGATGGCACCTACCCATCAAATTTTGCTACGTTTCTTAGCACTGCCAAGAAACAGAAACAGATGAGTTTGAAGGACGAGGAAGAAGAGTTTTGTTGCACCCAACTTTTTCAGAAGGAATTAACGCCCAGTGATGTGGGGAAGCTCAACAGGCTTGTGATCCCCAAGAAACACGCAATTACCTATTTCCCTTACGTTTGTGGCAATGGCAATGATGAAGTGGAGGTTGTGTTTTATGACAAACTTGTGCGATTGTGGAAATTTCGATACTGCTATTGGAAGAGCAGCCAGAGTTACGTGTTGACCAGAGGCTGGAATCGGTTTGTGAAGGATAAGAAACTAAAGGCTAAAGATGTGATTGCGTTTTCTATGGGTTGTAGAAAAGGGGGAGAGGGGGAAGCTTTCGCATTCATCCATGTAATATATAATGATGTAGCAGCTGAAGAGATCAGCAAGGGAGATGACAAACTAGTTTTGGGAAACCATGCACTTTGCAGTGAAGAAGATGGAAAGGCACAAAAGGGTTTGAGGCTCTTTGGTGTCTCTATCACCTGA 888 0.4347 MININKESSDCRQMKKTLLEAGGHEEKKAFEKLKGVVPQQNGNWGAQIYANHQRIWLGTFKTQREAAMAYDSASIKLRSGESHRNFPWSDQTVEEPHFQSHYSAEAVVSMIRDGTYPSNFATFLSTAKKQKQMSLKDEEEEFCCTQLFQKELTPSDVGKLNRLVIPKKHAITYFPYVCGNGNDEVEVVFYDKLVRLWKFRYCYWKSSQSYVLTRGWNRFVKDKKLKAKDVIAFSMGCRKGGEGEAFAFIHVIYNDVAAEEISKGDDKLVLGNHALCSEEDGKAQKGLRLFGVSIT 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g00089 295 SMART B3_2 148 252 IPR003340 GO:0003677
Pste4g00089 295 Gene3D - 144 255 IPR015300 -
Pste4g00089 295 CDD AP2 32 89 IPR001471 GO:0003700|GO:0006355
Pste4g00089 295 SMART rav1_2 32 93 IPR001471 GO:0003700|GO:0006355
Pste4g00089 295 CDD B3_DNA 147 235 IPR003340 GO:0003677
Pste4g00089 295 FunFam AP2 domain-containing protein RAP2.8 31 88 - -
Pste4g00089 295 SUPERFAMILY DNA-binding domain 32 89 IPR016177 GO:0003677
Pste4g00089 295 SUPERFAMILY DNA-binding pseudobarrel domain 146 236 IPR015300 -
Pste4g00089 295 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 31 294 IPR044800 GO:0003700
Pste4g00089 295 ProSiteProfiles AP2/ERF domain profile. 32 87 IPR001471 GO:0003700|GO:0006355
Pste4g00089 295 Pfam AP2 domain 33 78 IPR001471 GO:0003700|GO:0006355
Pste4g00089 295 Gene3D AP2/ERF domain 32 88 IPR036955 GO:0003700|GO:0006355
Pste4g00089 295 Pfam B3 DNA binding domain 148 236 IPR003340 GO:0003677
Pste4g00089 295 ProSiteProfiles B3 DNA-binding domain profile. 148 255 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g00089 Pste-Chr4 923325 924212 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g00089 32 294 RAV Transcription Factor Family AT1G50680 50.962 4.25e-90 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pste4g00089 B3 1e-24 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste4g00089 4 923325 924212 Pste4g00089 4 923325 924212 ECH