Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g00083 CTCGGGTCGTGGTGAGATACGGATAGAGTGATGTCTATAGACCATAGCCGATAGATCTAACATTGCGAATGCGAATGCGAATGCGAATGCGAAGGCACTGTAGAGTGTAGAAAGCAAAAGTTGATGCATTGCATTTGATTTCATAGTCTCAGCTCTCTTCTTGTGTGTTGGGGTTGGGGTTAGGGTTAGGGTTAACGTTAGGGTTTAGGGTTTGTGTTCATGGATCGCAAGAGGGGGAGGCCTCAAGCTGCCTTCAAAGCTAAGAAATCCCGCGCAGAATCGGACTCCTTTCCAACTGGTTTAGGAAGCAAATCGAAGCCATGCACAAAGTTTTTCAGTGTAGTGGCTGCTGTAGCAGCATTTCACCGGGCTATATGGTGTCTTAAATCTTGTGAGTACCCTCCAATATTAGCATATGAAGAGTGCTTTATTGAGGCAGTTTCGAGTAGCGAGGGTGAATGCCTTTGTAGTGTGTACGTTGCTGAAGGAATATCAGATAGTCAAATCCCCTTATTTCCAAGTTACATAGAGAAATGGATCACCTCTGGCTGTCCCTTTGGTGAAGGATGCCATTTCCTGCATTATGTTCCTGGTGGCTTGAAAGTTGTCTCTCAGTTGATTGATGCTGGTAGCGATCCTGCTATTCTTCAAGTTAGTAGAAATCCTATTCCACCATCCTTCCCAGATGGATCTTCTCCTCCAGTTGTTAAAACCCGATTGTGCAACAAGTTTAATACAGCTGAAGGTTGCAAATTTGGTGACAGATGTCACTTTGCCCATGGTGAGTGGGAGCTGGGCAGGCCTACGGCCCCATCATATGAAGATCCCCGAGTTTTTGGACAAATGGCAAGCAGCCGGGTGGGTGGACGGGTTGAACCCTCGTTTCCAGCTCATGGAGCTGCTGCCAGCTTTGGTGTCTCGGCTACTGCAAAAATCAGTATCACTGCTTCCCTAGCCGGGGCTATCATTGGAAAAAATGGTGTCAACTCCAGACAAATATGTCGTGTAACAGGAGCTAAACTTTCCGTAAGGGATCATGACACGGATCCTAATCTTAGAAACATTGAGCTTGAAGGAAGTTTTGATCAGATCAAACAAGCGAGTGCAATGGTTCATGAACTTATTCTAAATGTTAGTTCTGCCTCTGGGCCTCCAATGAAAAGCTTTGCTACACAGACTTCTACTCCTACAGGCAATTTCAAGACTAGGCTGTGTGAAAACTTTTCTAAAGGTTCCTGCACTTTTGGGGAAAGGTGTCATTTTGCACATGGAACTCACGAATTGCGCAAGCCTGGAATGTGAGTCTTATAGTTTAGTTCACATGGTTCTTTTAGTGAAGATTGAATTGTGCAGAATTTTCTAGTTTTTCAAATTTTTGTCAATCTGCTTCTAATTTGCTACATGATAACTAATGGTCAGTCTTCCCTGAGTTTTAAGATTCAACTGCCTTCTGCCATCTCCATATTTCGGGGAGAAAAACTTGTACGGATACTTAACTAAATATCAAGTGTTAGGCAGATCCTA 1524 0.4403 MDRKRGRPQAAFKAKKSRAESDSFPTGLGSKSKPCTKFFSVVAAVAAFHRAIWCLKSCEYPPILAYEECFIEAVSSSEGECLCSVYVAEGISDSQIPLFPSYIEKWITSGCPFGEGCHFLHYVPGGLKVVSQLIDAGSDPAILQVSRNPIPPSFPDGSSPPVVKTRLCNKFNTAEGCKFGDRCHFAHGEWELGRPTAPSYEDPRVFGQMASSRVGGRVEPSFPAHGAAASFGVSATAKISITASLAGAIIGKNGVNSRQICRVTGAKLSVRDHDTDPNLRNIELEGSFDQIKQASAMVHELILNVSSASGPPMKSFATQTSTPTGNFKTRLCENFSKGSCTFGERCHFAHGTHELRKPGM 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g00083 360 MobiDBLite consensus disorder prediction 1 20 - -
Pste4g00083 360 ProSiteProfiles Type-1 KH domain profile. 234 298 - -
Pste4g00083 360 SMART kh_6 233 303 IPR004087 GO:0003676
Pste4g00083 360 Pfam RNA-binding, Nab2-type zinc finger 111 121 - -
Pste4g00083 360 Pfam KH domain 237 299 IPR004088 GO:0003723
Pste4g00083 360 CDD KH-I_AtC3H36_like 237 302 - -
Pste4g00083 360 MobiDBLite consensus disorder prediction 1 29 - -
Pste4g00083 360 Gene3D K Homology domain, type 1 231 323 IPR036612 GO:0003723
Pste4g00083 360 SUPERFAMILY CCCH zinc finger 160 193 IPR036855 GO:0046872
Pste4g00083 360 SMART c3hfinal6 164 189 IPR000571 GO:0046872
Pste4g00083 360 SMART c3hfinal6 101 123 IPR000571 GO:0046872
Pste4g00083 360 SMART c3hfinal6 326 352 IPR000571 GO:0046872
Pste4g00083 360 ProSiteProfiles Zinc finger C3H1-type profile. 163 190 IPR000571 GO:0046872
Pste4g00083 360 FunFam Zinc finger CCCH domain-containing protein 321 357 - -
Pste4g00083 360 ProSiteProfiles Zinc finger C3H1-type profile. 326 353 IPR000571 GO:0046872
Pste4g00083 360 PANTHER CCCH ZINC FINGER/TIS11-RELATED 11 210 IPR045877 GO:0003729
Pste4g00083 360 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 327 351 IPR000571 GO:0046872
Pste4g00083 360 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 164 189 IPR000571 GO:0046872
Pste4g00083 360 FunFam Zinc finger CCCH domain-containing protein 157 194 - -
Pste4g00083 360 Gene3D - 324 357 - -
Pste4g00083 360 Gene3D - 157 194 - -
Pste4g00083 360 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 229 305 IPR036612 GO:0003723
Pste4g00083 360 SUPERFAMILY CCCH zinc finger 326 356 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g00083 Pste-Chr4 874882 879332 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pste4g00083 KH_1 1.6e-10 CL0007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste4g00083 4 874882 879332 Pste4g00083 4 874882 879332 ECH