Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g00072 ATGGAGGAAGAAGGGTCAAGGGGAAGGGGGGCCGGAGATGTCCGGTACCGGGGTGTCCGGTGTCGGCCGTGGGGGAAGTTCGCGGCGGAGATTCGAGACTCCACGAGGCAGGGTCAGAGGGTGTGGCTGGGGACTTTCAACACGGCAGAGGAAGCAGCCAGAGCCTATGATAGAGCTGCTTATGCCATGAGAGGTCCCTTTGCAATTCTCAACTTCCCTGATGAGTACCCTATGACTGCTGGTGGTGCCACCAATGCTGCCACTCATTCCTCTTCCTTTGGTGCTTCATCTTCCTCAGCCTCTTCTTCTAGGCATGCCAGTGTCAGTGTGGAATCCAGAGGAACAAGTGACCAAGGAAGGCAAGTGTTTGAGTTTGAATACTTAGATGACAGGTTGTTGGAGGAACTTCTTGATTGTGAGGACAAAAAGAAAAGGGGACCATGA 444 0.536 MEEEGSRGRGAGDVRYRGVRCRPWGKFAAEIRDSTRQGQRVWLGTFNTAEEAARAYDRAAYAMRGPFAILNFPDEYPMTAGGATNAATHSSSFGASSSSASSSRHASVSVESRGTSDQGRQVFEFEYLDDRLLEELLDCEDKKKRGP 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g00072 147 SUPERFAMILY DNA-binding domain 15 75 IPR016177 GO:0003677
Pste4g00072 147 MobiDBLite consensus disorder prediction 78 117 - -
Pste4g00072 147 FunFam Ethylene-responsive transcription factor 2 15 74 - -
Pste4g00072 147 Gene3D AP2/ERF domain 14 74 IPR036955 GO:0003700|GO:0006355
Pste4g00072 147 PRINTS Ethylene responsive element binding protein signature 39 55 IPR001471 GO:0003700|GO:0006355
Pste4g00072 147 PRINTS Ethylene responsive element binding protein signature 16 27 IPR001471 GO:0003700|GO:0006355
Pste4g00072 147 SMART rav1_2 15 79 IPR001471 GO:0003700|GO:0006355
Pste4g00072 147 MobiDBLite consensus disorder prediction 83 117 - -
Pste4g00072 147 CDD AP2 15 74 IPR001471 GO:0003700|GO:0006355
Pste4g00072 147 PANTHER DNA-BINDING DOMAIN 15 141 IPR044808 GO:0003700|GO:0009873
Pste4g00072 147 ProSiteProfiles AP2/ERF domain profile. 15 73 IPR001471 GO:0003700|GO:0006355
Pste4g00072 147 Pfam AP2 domain 15 65 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g00072 Pste-Chr4 792796 793239 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g00072 15 144 AP2-EREBP Transcription Factor Family AT3G23230 56.489 7.28e-41 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Pste4g00072 AP2 2e-15 CL0081