Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g00053 TAAACACAAATGAGTACCATAGAATTTGGAAGACAGACTTTCCTAAGTTCCATCTTATTAGTCTTTTTGTATGTATTGGGAAGTTATGGAAGGAAACATGGGTTGGGGTGTAATTGAAGAGGAGGGATGGAGGAAGGGACCTTGGACTGCTGAAGAGGACAGATTGCTCATTCAGTATGTCAGGTTGCATGGTGAAGGCAGATGGAACTCTGTTGCTAGGCTTGCAGGACTGAAGAGAAATGGGAAGAGCTGCAGATTGAGATGGGTGAATTACCTGAGACCAGACCTCAAGAAGGGTCAGATAACACCACAAGAAGAAACCATAATTCAAGAGCTGCATGCTAGGTGGGGAAACAGGTGGTCAACAATTGCAAGAAGCTTGCCAGGAAGAACTGACAATGAGATAAAGAATTATTGGAGGACCCATTTCAAGAAAAAGACTAAAGCCCCCTCTGATGCTGCTGAGAAGGCCAAAATTCGTTCCTCAAAGAGACAGCAATTTCAACGGCAACAACAGCAGTTGAAGCAGATGCAGATTCAGCAGCAGCATCAGCAACAGCAACAACAATTCCAATTCAACTTGGACATGAAAGGGATCATAAACATGCTTGAGGAAAATGACCATAGAGTCCCTTCTATATCTCAAGAGACACAAGAAATGGCCAGCATGTACCCAAACACTTCAGAACAGCAGAGTTACTTCTACTCTATGTTCAATGCCAATGACAATGTCTCTGCACCTGAGTCCTCAAACGAAGAAATTCTGTGGGATGGACTGTGGAACTTGGACGATATTCTTTGCAATTTTAATGCAGCTAGTGCTACAACCAAAGCTGGCCTACACAACTTAGTTGCTCCTTTCTGTTAAGTTTTTATTTAGCCTCGAAAAAACTCTTAGGAGAATAGTACTAAAGTGAGTCACGGCTTGATAAGGATCCTAAATCCAGGATCTTAGAATTAGAGTTAGGATTAATTGAATCATAAAATGTGGAGTCAGAGTACGTAGTGAGTGATATTCTGAAGGCGAGTTATTGTGTAACCCATTAATAAAGTGTCTCAGTTTTGCTTATAAAGTCTGAAATGTGC 1086 0.4153 MYWEVMEGNMGWGVIEEEGWRKGPWTAEEDRLLIQYVRLHGEGRWNSVARLAGLKRNGKSCRLRWVNYLRPDLKKGQITPQEETIIQELHARWGNRWSTIARSLPGRTDNEIKNYWRTHFKKKTKAPSDAAEKAKIRSSKRQQFQRQQQQLKQMQIQQQHQQQQQQFQFNLDMKGIINMLEENDHRVPSISQETQEMASMYPNTSEQQSYFYSMFNANDNVSAPESSNEEILWDGLWNLDDILCNFNAASATTKAGLHNLVAPFC 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g00053 265 SUPERFAMILY Homeodomain-like 19 116 IPR009057 -
Pste4g00053 265 CDD SANT 24 69 IPR001005 -
Pste4g00053 265 ProSiteProfiles Myb-like domain profile. 17 69 IPR001005 -
Pste4g00053 265 SMART sant 74 122 IPR001005 -
Pste4g00053 265 SMART sant 21 71 IPR001005 -
Pste4g00053 265 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 17 238 IPR044676 GO:0003700|GO:0006355|GO:0043565
Pste4g00053 265 MobiDBLite consensus disorder prediction 122 139 - -
Pste4g00053 265 Pfam Myb-like DNA-binding domain 75 119 IPR001005 -
Pste4g00053 265 Pfam Myb-like DNA-binding domain 22 69 IPR001005 -
Pste4g00053 265 FunFam MYB-related transcription factor 78 124 - -
Pste4g00053 265 MobiDBLite consensus disorder prediction 122 146 - -
Pste4g00053 265 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 21 73 IPR017930 -
Pste4g00053 265 CDD SANT 79 120 IPR001005 -
Pste4g00053 265 ProSiteProfiles Myb-like domain profile. 70 120 IPR001005 -
Pste4g00053 265 Gene3D - 79 123 - -
Pste4g00053 265 FunFam Myb transcription factor 22 74 - -
Pste4g00053 265 Coils Coil 137 164 - -
Pste4g00053 265 Gene3D - 22 74 - -
Pste4g00053 265 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 74 124 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g00053 Pste-Chr4 595681 597068 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g00053 17 265 MYB Transcription Factor Family AT3G24310 58.779 3.35e-85 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pste4g00053 Myb_DNA-binding 8.1e-17 CL0123