Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g00037 GGTGTTGGAGAAACGAAAACGAAAATCAGCTGGCGTGAGAAGCAGCTGAACAGAAGGAGAGGAATGGAGCAGGAAGAGCACGAAGTGTACGGAGCTGACATTCCCGACGATGAGGTTGATATGGACGCTGACGCCGAACAACAAGACGACCAACTTCCCCCGAATCACACTACCAAGGAATTGGAGGATATGAAGAAGCGCTTGAAGGAGATCGAGGAGGAGGCTAGCGCGCTTCGCGAAATGCAGGCCAAGGTTGAGAAAGAGATGGGTGCTGTTCAAGATTCGTCTGGTCCTTCTGCTACTCAAGCTGAGAAGGAGGAAGTGGATGCTCGGTCAATCTATGTTGGTAATGTTGACTATGCATGTACACCTGAAGAAGTCCAGCAGCATTTTCAGTCCTGTGGAACTGTGAACAGGGTGACAATACTGACGGACAAATTTGGTCAACCCAAAGGATTTGCTTATGTAGAATTTGTTGAGATTGATGCAGTTCAGAATGCTCTCCTGTTAAATGAATCAGAGTTGCATGGTCGACAACTGAAGGTGTCTGCCAAGCGAACTAATATTCCTGGAATGAAGCAGTATTATGGAAGAAGACCAACTGGTTTTCGATCTAGGAGGCCTTTCATGCCTGGTCCATTCTTTCCACCATATGTGTTAGAATTCATTACATGCTACTTACCGAAGTCGGTTCTTAAAGCTTGCTTGAAGTGTATTTACAATTATTGCGTGGCATATCCAAACACAGGAAATTGGGTTAAAAGAAAATGA 771 0.454 GVGETKTKISWREKQLNRRRGMEQEEHEVYGADIPDDEVDMDADAEQQDDQLPPNHTTKELEDMKKRLKEIEEEASALREMQAKVEKEMGAVQDSSGPSATQAEKEEVDARSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNALLLNESELHGRQLKVSAKRTNIPGMKQYYGRRPTGFRSRRPFMPGPFFPPYVLEFITCYLPKSVLKACLKCIYNYCVAYPNTGNWVKRK 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g00037 256 MobiDBLite consensus disorder prediction 87 107 - -
Pste4g00037 256 MobiDBLite consensus disorder prediction 30 47 - -
Pste4g00037 256 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 113 181 IPR000504 GO:0003723
Pste4g00037 256 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 111 187 IPR000504 GO:0003723
Pste4g00037 256 MobiDBLite consensus disorder prediction 1 61 - -
Pste4g00037 256 MobiDBLite consensus disorder prediction 1 29 - -
Pste4g00037 256 SMART rrm1_1 112 183 IPR000504 GO:0003723
Pste4g00037 256 FunFam Polyadenylate-binding protein 1 105 191 - -
Pste4g00037 256 CDD RRM_II_PABPs 112 183 - -
Pste4g00037 256 Coils Coil 61 88 - -
Pste4g00037 256 SUPERFAMILY RNA-binding domain, RBD 99 212 IPR035979 GO:0003676
Pste4g00037 256 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 26 205 - -
Pste4g00037 256 Gene3D - 32 191 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g00037 Pste-Chr4 396389 401549 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g00037 112 183 Eukaryotic Initiation Factors Gene Family AT2G36660 38.158 2.27e-09 55.5