Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g00021 TTTAATTTTCCACTCTGTTAAAAACTTGGTCCATCCCATCCATGTCAATTTTGGATCTCACAGTCACCGTTCACTTTGCATCACCAATTAATCCCCTCAACCTCTTCCCACACATGTCTATAAACATGGACGGAGAGAAAAGGCGCATTGATTGGTTTGTGATTGTTTCCCTTTTGTAGGGTTTGTGAGATGTCGGATGCACCAGCGAGCCCGAGTCATGAGAGTGGGGGCGAGCAGAGTCCGCGTGGTTCGTCGTCCGGTGCCAGGGAGCAGGACCGCTACCTTCCCATTGCCAACATCAGCCGCATCATGAAGAAGGCTTTGCCTCCCAATGGCAAGATTGCCAAAGACGCCAAAGACACTATGCAAGAATGCGTTTCTGAGTTCATTAGTTTCATTACCAGCGAGGCCAGTGAGAAATGCCAGAAAGAGAAGAGAAAGACCATTAATGGGGATGATTTGTTATGGGCCATGGCTACTTTAGGATTTGAAGACTACATAGAGCCGCTTAAGGTGTACCTAGCAAGGTACAGAGAGGGTGACACTAAAGGATCTGCCAGAGGTGGTGATGGATCTGCTAGACAAGATCAAGTTGGTCTTGCAGCTCAAAATGCTCAGGCGCAACCACAACATCTTGTTATGCCTTCAATGCAAAGCCATGAATAGTTTAGATGCTTCCACCGCGCATCTTATTTATTTCACTTGAATGTTTGTACGCATGGCATGGGTGGAAACAATGGTTTGGTGATTTAAAATTTAGGTTCTCGTGTAAAAGGCACGAGGGTCTGAATTTTGTTGCGATACTAATGTAGATTTTTATTAATACATATCATATTTAGCCACCCTGATCAACTCAAGGAGATATGTGATTGGGGTTATGCATGTGATTCGCCATGTCACCTATTTGCTGATACTACATTTGTTACTTTATTTAATTTAGGCCAAATAGTTTGCTTCTCTCTTAATGATTTAAAAAATG 979 0.4341 MSDAPASPSHESGGEQSPRGSSSGAREQDRYLPIANISRIMKKALPPNGKIAKDAKDTMQECVSEFISFITSEASEKCQKEKRKTINGDDLLWAMATLGFEDYIEPLKVYLARYREGDTKGSARGGDGSARQDQVGLAAQNAQAQPQHLVMPSMQSHE 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g00021 158 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 31 95 IPR003958 -
Pste4g00021 158 FunFam Nuclear transcription factor Y subunit B-3 20 146 - -
Pste4g00021 158 MobiDBLite consensus disorder prediction 1 29 - -
Pste4g00021 158 Gene3D Histone, subunit A 18 156 IPR009072 GO:0046982
Pste4g00021 158 PRINTS CCAAT-binding transcription factor subunit A signature 97 115 - -
Pste4g00021 158 PRINTS CCAAT-binding transcription factor subunit A signature 59 77 - -
Pste4g00021 158 PRINTS CCAAT-binding transcription factor subunit A signature 78 96 - -
Pste4g00021 158 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 14 140 IPR027113 GO:0001228|GO:0006355|GO:0016602
Pste4g00021 158 SUPERFAMILY Histone-fold 28 143 IPR009072 GO:0046982
Pste4g00021 158 ProSitePatterns NF-YB/HAP3 subunit signature. 62 78 IPR003956 GO:0005634|GO:0006355|GO:0043565
Pste4g00021 158 MobiDBLite consensus disorder prediction 118 158 - -
Pste4g00021 158 MobiDBLite consensus disorder prediction 134 158 - -
Pste4g00021 158 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g00021 Pste-Chr4 190089 196207 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g00021 9 152 CCAAT-HAP3 Transcription Factor Family AT2G37060 70.886 3.79e-73 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Pste4g00021 CBFD_NFYB_HMF 7.1e-29 CL0012