Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g04164 GTATGTAACCTTGTTCCTTCATTACTTCCTTGTTCTTTCTCTCCCTCGTTGTCTCTGTCTGATTCTTCATTAATCACGCGTCTATTATACGGTAGTGATCCTCGGATTCATCATTCATTTTCTTCCAAATCAGCGTGGATTCTTGAACATCTGATTTTCTACTTATTAATGGCCACCCCAAGTAAATCAACACCAGTAATATCTTCAGACACTTTGGAACAGAAAGGGAAGAGTATGACTGAATCAAATGCAAACATTCTTCAATGTCCTTTAAACCAGCAACTCCGTAGCTCCCTAGATGGCCCCGTAGCAATCCTTTGGGATATTGAAAATTGTCCCGTGCCAAGTGATGTACGTCCTGAAGATGTAGCAGGTAATATAAGGATGGCTTTACGGGTGCATCCGGTAATCAAAGGAGCTGTTATGATGTTTTCTGCTTATGGGGATTTCAACTCTTTCCCTAGGCGACTTAGAGAGGGCTGTCAGAGAACTGGTGTTAAACTTATTGATGTTCCCAATGGGAGGAAAGATGCTGCTGATAAAGCTATCTTGGTTGACATGTTCTTATTTGCTCTTGACAACCCTCCACCATCCTCTATCATGCTCATATCTGGAGATGTTGATTTTGCACCAGCCCTTCACATTCTTGGTCAGCGGGGATATACTGTAATTCTTGTCATCCCTGCTGGGGTGGGTGTTTCTTCTGCCCTATGCAATGCTGGCAAATTCGTCTGGGACTGGCCTAGTGTGGCTCGTGGAGAAGGCTTTGTACCACCTTCAAAAGCTTTAGTACCACCCCGTGGAGGACCCATTGAGCTTGCTGGATATTTGATGGGGTGCAATATCAATGACAACTGTGATGGACAAAATGAAGAAGAAGCAATAGTTTATAGAGGGATGTCACCGAGCTATTATAACTCAAGGGAATTTGCAGTGGTGTCACAATCTCTGTCTGAATACAATTGTGGCACATCGAACATGACTTGCATGCCAACAACTATGAGATCACATAGCCTTCCATCTGTTTGGAATGATGCTTCAGGAGGATATATGCCTTCTAATGACCATAATGAATGCCAGTTATGGGTACAGCCTGGTGATTTAAATGGTCTCAAGGGGCAGCTGGTAAGGTTGCTTGAACTATCCGGAGGATGCCTGCCTCTGGCCCGAGTTCCAGCAGAGTACCAGAAAATTTATGGGAGACCTCTTTATGTAGCTGAATATGGGGCAATAAGATTGGTCAATCTTTTCAAAAAGATGAATGATGCCATGGCTGTGGAAGGGAAAGGGAACCGTAAGTATGTGCATCTCAGAAATTGGAAGGCAGGCCCTAGTGCCCCTCCTTTGTCACTGGCAAAGAAAGATAAGAAAGGAAAGGGATCCCAGGAAGAGCATGCGAATGCTGTCACTGGTGGCTGCTCTTCAGACGAGTTCTCAGATGAAGAAAGGGTAGTCATAGAAGAGAATGATGAAAGAAGTTGCGCAGGAAAGGTCAATCAGGGGAGAGCAGCCAAATGTGAAGTTGGTAACCGAGTAATTGAGCAGTTCAAGTATGAGCTGCAGGAGATTCTAGTAAGCTATTCTTGTCGAATATTCTTAGGTTGTTTTGAAGCTATATACCAACAGCGGTACAAGAAACAACTGGAATATCAGCGATTTGGTGTGGAAAAGTTGGAAGATTTGTTTGAGAAAGTGAACGATGTTGTGGTATTGCATGAGGAACCTGTAAGCAAGAGGAAGTTTCTGGCAGCTGTGGGTAGCTAGAAAACTTGGCAACGGACTGCTTTTTACTTTAACCGTTCTGATGTTTTTTAGTTTATTTATTCCTTAGAAGTCTTGTAAAAATGATATGCTGGGCGTATGTGTTTTTTTTTTATAGCCACTGTCCTGCATGTATTTGAATCTTTACCAAAACTTGTTTACTTCCTGTCTCTGCAACCGATTAGCTACTTAGAGCAGTCGGGAGACATGTACAAGTAGCTTATGTATTTCTATCCTGTATCCTATCTCAATATACCATTCTTCCAC 2028 0.4285 VCNLVPSLLPCSFSPSLSLSDSSLITRLLYGSDPRIHHSFSSKSAWILEHLIFYLLMATPSKSTPVISSDTLEQKGKSMTESNANILQCPLNQQLRSSLDGPVAILWDIENCPVPSDVRPEDVAGNIRMALRVHPVIKGAVMMFSAYGDFNSFPRRLREGCQRTGVKLIDVPNGRKDAADKAILVDMFLFALDNPPPSSIMLISGDVDFAPALHILGQRGYTVILVIPAGVGVSSALCNAGKFVWDWPSVARGEGFVPPSKALVPPRGGPIELAGYLMGCNINDNCDGQNEEEAIVYRGMSPSYYNSREFAVVSQSLSEYNCGTSNMTCMPTTMRSHSLPSVWNDASGGYMPSNDHNECQLWVQPGDLNGLKGQLVRLLELSGGCLPLARVPAEYQKIYGRPLYVAEYGAIRLVNLFKKMNDAMAVEGKGNRKYVHLRNWKAGPSAPPLSLAKKDKKGKGSQEEHANAVTGGCSSDEFSDEERVVIEENDERSCAGKVNQGRAAKCEVGNRVIEQFKYELQEILVSYSCRIFLGCFEAIYQQRYKKQLEYQRFGVEKLEDLFEKVNDVVVLHEEPVSKRKFLAAVGS 587
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Pste3g04164 587 Gene3D - 98 248 - -
Pste3g04164 587 ProSiteProfiles OST-type HTH domain profile. 367 439 IPR025605 -
Pste3g04164 587 MobiDBLite consensus disorder prediction 445 475 - -
Pste3g04164 587 Pfam NYN domain 102 241 IPR021139 GO:0004540
Pste3g04164 587 CDD LOTUS 368 437 - -
Pste3g04164 587 ProSiteProfiles OST-type HTH domain profile. 512 586 IPR025605 -
Pste3g04164 587 Pfam OST-HTH/LOTUS domain 369 435 IPR025605 -
Pste3g04164 587 Pfam OST-HTH/LOTUS domain 513 575 IPR025605 -
Pste3g04164 587 CDD LOTUS 513 575 - -
Pste3g04164 587 Gene3D - 509 579 IPR041966 -
Pste3g04164 587 Gene3D - 367 436 IPR041966 -
Pste3g04164 587 PANTHER LIMKAIN B LKAP 77 550 IPR024768 GO:0005777|GO:0010468
Pste3g04164 587 CDD PIN_limkain_b1_N_like 102 228 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Pste3g04164 Pste-Chr3 38561284 38564498 Dispersed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g04164 99 253 C2H2 Transcription Factor Family AT5G61190 41.935 2.21e-27 115