LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste3g04162	TTCTCACTCATTCTCTCTCACACACACTCTCTCTACCTCTTTTTCTCTCTCTATCTCACACACACACGTTCATTGACCCACTGGACCTTCTGAAAAGTCCAAGAAAACCTATTGTAGCGGCCACTAGCGGTGTATGGTGTTCCCTAAATGGGTGGTTAACACTTAACGCAGACACATGCACTGTTACACAAACTCTTGTTGAAGCCCTTAAATTTCTTTAGTGTTAATCTTTGTTCTCTTTCAACTACTCCACCATGCTCTACTGGCTTGCCTCTTTGTTGGGATTGTTGGCTTTTCTTGGAATGCAGTTTCCTGTCATAATGGCTGATTGCCCTTTGAATTTTACCAGTGCAAACTTCACATTGGCATCCTCTCTATGCTCTAACCATGGTGACAGGGGGAAATGTTGCCGCTACATTAATACTAACGTTGCAATTTCTGTTGCTCGTTTTGCTAATGCTACAGGCACCCTAGGGGTGCCTCAAAATGTGTCTGATATCTGCCTCCAAACCATATTTCAAACCTTGCAACTTAATGGAGTTGCACAAAATGCAACCACTTTCTGTGGTTTTGGGACAAAAATTCCTGTTAATTATGCATGCAAGGGGAGAACTAGTGTTGTCCAAATGCTGCAATCCCCCAGATTTATAGAGGTCACAAAAAATTGCAAAGCGCCACTTGCAGAGGAAAGTAAATGTAAGAAGTGCTTAAATGCTGGCTTTGGTTATCTGCATCATATCGGAATTGAAGATAACATAACACTGAGTACATGTCGTGATGCCACTTTTGCTGCACTAGCAAGCCAACTTGATGAGCTGTCTTCTATTGACATTGCAATTTGTTTCTTCGGTGTTCAAGGACTTCTCATACCTCCTGTTTCAGACTCATCCCCATCCTTGCCTGCTCCTAAGGCCTCTCCAACTCCTCTGATTGCTGATGGACCAAGTCAACCATTGTTAAGTGCACCTTTAAAGGGAAACCACCACTCATATCATTTGACATTAGTTCCAGGTATTGCTATTGCAGTTACAGCTGTTGCTGTTATCACACTCATAGTCTTGATAGTTCTAATTCGCCAGAAAAGCAGAGCGCTAGACGAGCCTGATAACTTTGGTAAAACTGGTTCGAAAACCTTACCTCCATGTGCAACATGGAAATTTCAGGAAGGTAAGCACTTTATTTTTTCGTACTTTGCTTCCTGTTTGGGATCAGCAGGTTCTTCATCTATGTTCCAAAAATTCAGCTACAGGGAGATAAAAAAGGCAACAGAGGATTTTAGTACTCTCATTGGCCAAGGGGGATTTGGAACTGTGTACAAAGCTCATTTTTCTGATGGCCTGGTTGTGGCAGTAAAACGGATGGACAGAATCTCTGAGCAGGGGGAGGATGAGTTTTGCAGAGAAATTGAACTTCTTGCTCGGCTGCACCATCGGCATCTTGTTTCTTTAAGAGGCTTTTGCATTAAAAAACGTGAGAGGTTTCTCTTGTATGAGTACATGGGAAATGGAAGCTTGAAAGATCATCTTCATACCCCTGGTAAAACACCTTTAAGTTGGCGAACGAGAATCCAAATTGCTATTGATGTTGCCAATGCACTGGAGTACCTCCATTTCTATTGTGATCCTCCTCTGTGTCACAGAGATATTAAATCTAGCAACACTTTACTGGATGAGAACTTCGTAGCCAAGATAGCTGATTTTGGCCTTGCACAAGCTTCTAAAGATGGCTCAATATGCTTTGAACCTGTAAACACTGAAATCCGGGGAACTCCAGGTTATATGGATCCTGAATATGTTGTTACTCAAGAGCTCACCGAGAAAAGCGATATATACAGTTTTGGGGTGTTACTACTTGAAATTGTGACAGGAAGACGAGCCATTCAAGATAATAAGAATTTGGTAGAATGGGCACAACCATACATGGAATCAGATACGAGATTATTAGAGCTAGTAGATCCCAATGTGAGGGAGTCTTTTGACTTGGATCAGCTCCAAACAGTAATCTCTATAGTAGCATGGTGCACCCAGAGAGAAGGAAGGGCAAGGCCTTCAATAAAACAAGTACTTAGGCTTCTGTATGAGACATCAGAACCAATGCACAGTGAGTTTCTACAAGCTGTTGAAGATGAAGATTGTCAGGGAAGTCAGCATAGAGGCAGAAGAAGCAAGGGGAAAATGCTCAGAAACGAGGCATTGTTTCACAGTGGAGAAGGAAGGTATCTTGCTTCATCTTCAAGTACATCTCGGTCCTATTGCAGTAGAACCTTTTTACTTGAGAATGGCTCTCCACAGTCTCCACCAAATATGTTCTCTCTCTGAAACAATTGTTAGGGTCTTCAAGTTGACTTGAATTTTGAATTTCTCATTTACTCACTGACTTCAAATTTGTGGATTTGTTAGGAAGTAGGAGACACTCATAAGGCGTAAATCTTGGGAGAAATGAGAAAAATAGTAGTACTTTTTTGCTTTTATTATCCACATTGTCTGGCTGCACATAGTGAATGAAGAAACATGAGCATTGTTCCTGATTATAATGTTTTCAAGAAATTGTTTTAAGAGAACCTTTCAAATCTACAGTAACTGAGGCTTTTGGGGTGACAAATTTCAATTTCATATGCCTGCAAATGTCCTTTACCACGCGTCGTTTCAAAAGAGAACCTTCAGATCTTGGTATCCCACCGAGTTGTTGTAAACTTGGAATGCAAAGTCAACAAGCTATATATCTTTCTTGACTAAGATCCCTT	2743	0.412	MLYWLASLLGLLAFLGMQFPVIMADCPLNFTSANFTLASSLCSNHGDRGKCCRYINTNVAISVARFANATGTLGVPQNVSDICLQTIFQTLQLNGVAQNATTFCGFGTKIPVNYACKGRTSVVQMLQSPRFIEVTKNCKAPLAEESKCKKCLNAGFGYLHHIGIEDNITLSTCRDATFAALASQLDELSSIDIAICFFGVQGLLIPPVSDSSPSLPAPKASPTPLIADGPSQPLLSAPLKGNHHSYHLTLVPGIAIAVTAVAVITLIVLIVLIRQKSRALDEPDNFGKTGSKTLPPCATWKFQEGKHFIFSYFASCLGSAGSSSMFQKFSYREIKKATEDFSTLIGQGGFGTVYKAHFSDGLVVAVKRMDRISEQGEDEFCREIELLARLHHRHLVSLRGFCIKKRERFLLYEYMGNGSLKDHLHTPGKTPLSWRTRIQIAIDVANALEYLHFYCDPPLCHRDIKSSNTLLDENFVAKIADFGLAQASKDGSICFEPVNTEIRGTPGYMDPEYVVTQELTEKSDIYSFGVLLLEIVTGRRAIQDNKNLVEWAQPYMESDTRLLELVDPNVRESFDLDQLQTVISIVAWCTQREGRARPSIKQVLRLLYETSEPMHSEFLQAVEDEDCQGSQHRGRRSKGKMLRNEALFHSGEGRYLASSSSTSRSYCSRTFLLENGSPQSPPNMFSL	687

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste3g04162	687	SUPERFAMILY	Protein kinase-like (PK-like)	322	610	IPR011009	-
	Pste3g04162	687	Pfam	SPARK	25	162	IPR043891	-
	Pste3g04162	687	FunFam	Putative receptor-like protein kinase	310	414	-	-
	Pste3g04162	687	Gene3D	Phosphorylase Kinase; domain 1	316	414	-	-
	Pste3g04162	687	FunFam	Putative receptor-like protein kinase	415	615	-	-
	Pste3g04162	687	ProSitePatterns	Protein kinases ATP-binding region signature.	345	367	IPR017441	GO:0005524
	Pste3g04162	687	CDD	STKc_IRAK	345	607	-	-
	Pste3g04162	687	Gene3D	Transferase(Phosphotransferase) domain 1	415	631	-	-
	Pste3g04162	687	PANTHER	OS01G0750732 PROTEIN	168	627	-	-
	Pste3g04162	687	SMART	serkin_6	339	607	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste3g04162	687	ProSiteProfiles	Protein kinase domain profile.	339	618	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste3g04162	687	Pfam	Protein kinase domain	343	605	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste3g04162	687	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	459	471	IPR008271	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste3g04162	Pste-Chr3	38554471	38561041	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste3g04162	19	687	Receptor kinase-like Gene Family	AT3G19300	57.418	0.0	743

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_URK-1	Pste3g04162		Pkinase	5.6e-49	CL0016