Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g04159 ATGCCTGGAAGTTTAGAACCCTTGGATTTGGGGGTTCACATACCCTACCACTTCAGATGCCCAATCTCGCTTGAACTCATGCGAGACCCCGTCACCGTCTGCACCGGTCAAACCTACGACCGAGCCAGCATCGAGTCATGGGTTGGCACCGGTAACACCACGTGCCCGGTAACACGAGCCGCTCTCACCGATTTCACGCTAATCCCCAACCACACCCTTCGCCGCCTTATCCAAGAGTGGTGCGTCGCCAACCGCGCTTTTGGGGTTGAGCGAATCCCCACTCCCAAACAGCCCGCCGACCCTGCCTTAGTTCGCTCTCTTCTCAACCAAACGTCTTCACATTCCGCTCCAACGCACGTTCGCCTCTCCTCGATTCGTCGACTCAGACAACTCGCTCGCGACTCCGACAAGAACCGCTCCCTCATTGCCTCTCACAACATCCGCCAGATCCTTCTTCCCATCGTTTTCAACTCTCCCGGTGAGTTGAGTCACGACTCGCTCGCGCTGCTCGTTCTGTTTCCGCTCGGCGAGTCGGAGTGCGCTCAACTCGGCCGCGTTGATCGAGATTGTCGTCGCCGGCACGCACTCGCCCGAGCTGCGCGCGGAGGTGAGCAATGTCGACGAAATCTACAACGGCGTCGTGGACTTGCTCCGGAACCCGATCTCGCACCCGCGCGCGCTCAAGATCGGAATCAAGGCCTTGTTCGCCCTGTGTTTGGTGAAGCAGACGCGCCACAAGGCGGTGGCCGCCGCCGCCCGGAGGCGCTCATCGATAGGCTCGCGGACTTCGAGAAATGCGACGCCGAGAGGGCGCTGGCAACGGTGGAGCTCCTCTGCCGGATTCCGGCGGGATGCGCGGCGTTCGCCGGCCACGCGCTGACGGTGCCGATGCTCGTGAAGATTATTCTTAAGATATCGGACCGCGCGACGGAGTACGCCGCCGGAGCGCTGCTTTCGCTGTGCTCCGAATCGGAGCGGTGCCAGCGCGAGGCGGTGGCGGCGGGCGTGCTGACTCAGCTTCTGCTTCTTGTTCAAAGTGATTGCACAGAGAGAGCCAAGAGAAAGGCCCAGATGCTGCTGAAGCTTCTTCGGGATTCGTGGCCGCAAGATTCCATTGGAAATTCTGATGATTTTGCATGCAGCCAGGTCGTTGTGGTTCCATTTTGA 1167 0.6007 MPGSLEPLDLGVHIPYHFRCPISLELMRDPVTVCTGQTYDRASIESWVGTGNTTCPVTRAALTDFTLIPNHTLRRLIQEWCVANRAFGVERIPTPKQPADPALVRSLLNQTSSHSAPTHVRLSSIRRLRQLARDSDKNRSLIASHNIRQILLPIVFNSPGELSHDSLALLVLFPLGESECAQLGRVDRDCRRRHALARAARGGEQCRRNLQRRRGLAPEPDLAPARAQDRNQGLVRPVFGEADAPQGGGRRRPEALIDRLADFEKCDAERALATVELLCRIPAGCAAFAGHALTVPMLVKIILKISDRATEYAAGALLSLCSESERCQREAVAAGVLTQLLLLVQSDCTERAKRKAQMLLKLLRDSWPQDSIGNSDDFACSQVVVVPF 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g04159 388 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 87 IPR013083 -
Pste3g04159 388 SMART Ubox_2 17 80 IPR003613 GO:0004842|GO:0016567
Pste3g04159 388 FunFam RING-type E3 ubiquitin transferase 8 90 - -
Pste3g04159 388 ProSiteProfiles U-box domain profile. 13 87 IPR003613 GO:0004842|GO:0016567
Pste3g04159 388 SUPERFAMILY ARM repeat 103 363 IPR016024 -
Pste3g04159 388 PANTHER WDSAM1 PROTEIN 255 369 IPR045185 GO:0061630
Pste3g04159 388 MobiDBLite consensus disorder prediction 207 228 - -
Pste3g04159 388 CDD RING-Ubox_PUB 15 67 IPR045210 -
Pste3g04159 388 Pfam U-box domain 14 85 IPR003613 GO:0004842|GO:0016567
Pste3g04159 388 Gene3D - 248 365 IPR011989 -
Pste3g04159 388 SUPERFAMILY RING/U-box 12 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g04159 Pste-Chr3 38485793 38487033 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g04159 253 388 U-box Gene Family AT3G19380 73.188 1.03e-51 176