Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g04156 TTACTGTGCGCTTGGTACTCTGTCCCTTTAATCTCTTTCTCTCTCTCTCTTGTTTCTTCTTTCTCGCCCCTTGTCGTCTTCTCATTGCCCCTTCTGTTCAATAATAATAACTTAATAAATAAAGAAAAAAAGAAAACAGTAATTCAAAGAGCAGAAGAATCATCGTCTTCATCATCATCGGCGTGGGATAGCTTGATTCTGATGCAAGGTCAAAGGAGGACTATTGGATCGTTCCCAGCTATTGTTAGTATGATACCAGGGCCCAGTTCTAGTGGCACTGATATGAATCATCAGTCTTCCTTGAATCATGTGCAAAATGCAGTAGATTTCCGGTTGTCAGATTATAGGGGATCTTCTGGTGAGACTGCATGTCTACGTGGTAATGGTCATAATGTTCAGGGTTTCAGTGGCTGGAATACTGGTGAATCTAGTTCTAGACTGAATCTGATCAACCAAGTCAATGATGACGGTCTAAAATCAGAACATGGGCTGCCTTCTTCATGTAATGCTACTGCCGAGGATGGTCTCAGGACTGTGGAAAGACAGTTTGAACCAAATAATGTAATTTTTCCTGTTACTTCAAATACCAATCAACAAGGCAATCAATCTAGAGTTCACCCTTCCTTTTTGCAAGGTTCCAGTTCTAATCATATCAACCAGAACATTAGTCTAGATATGGGGCACATTGCAAACGCTGCTGATCGTGGGAAGGGCAAAGAAGCTGGTGCTAGTGTTAATGACAACAATACTAGTGGATTAGATAGAGAAAAGACATTGTTTGGCAGTGCTTCATGTAATCACATAGGAGGTTCATCTGAAAGCTCTGGATACATGACTTGGGGTGATAGTGCTAGTTCGAGTTCCTCATTAGTTAATTGGGGTCCATCATGCAAGAGAAAGGCTCTTGAAGGTAGTTCTAGGCAACTGTGTGCTGGAGGAAGCTCAAGCACTCTCGTACAATCTGAAAATGGTTTCTGGCCTGCGAATCCTGTTGATCTTAATGCTTCTAGCAGCTTAAGTGATTCTATACCTTTAGAGGATATTCCTGTTACTAGTCCTCCATTATTTCATAACACAAGAAATGAAGTGAGACAAGAAACTTCTAATGCATTTCCTTTGATAAGTATTGCGGAAAATATGGAAAGACCTCTAAGAAACTTTGATAGAAGAATGAGCCAACTACAGCATCAGGAATCTGTACCTCTCAATTTACCATCAATGGGGAGTGCTAGGCATCATAATCATACTTCTTTGCATCAAGTACCTGGTTCACACTCAATCAATGATTCTTTGGAATTGAGGTTAACAGCTGGAGTAACAACTGCTAATTCTAGTGCTGCTCTGAACCAGTCGCCTACTATGCGCATCCATTCTTTTCCTTGGAACAGAACTGCCAATCCCAGAGGGGCCAGATCTTCAACTTCTTATAACTCTGGAGAAAGAGCTGTCCTGGAAGATTTTAATTTAAGAATGTTTCCCAGAGATAGTACTGAACATCCCATGAATGTGCCTGCTTCTTCAGGACATGAACCTACAGGTTGGCATACACCATCTGGTAATGTGAACAATTCTGGAGGTGTACCTCCTACACCTTGGATTGGATCTAGTTCAAATGTCCACCCCTCCCCTAACCCTAGCTGGATTTTTAATCGTGAAGTTCCAGCTGATAATATGCAGAGTGTGTCAGAGTTCAGTCCTTGGTCCCTTTTTCCATCAATTAGCTCTGCATCTGGTGTTCATAATGGCCATTCTACCCCATCTCCTTCTGGTCCTCCTTCATTTACCCAAGGTTCTAGCAGCAATCAATCGCATCTAAGAACAGCATTGTTGATGGAAAGAAGGGGTGGTGATGTTCTCTCTGGTCCTCATTCACTGCGAGCATTAACCTTTGACAACGAAGGGAGACGCCGACTAATATCTGAGATTCGCCAAGTCTTGATGGCTATGCGGAGGGGTGAGAGCTTACGAGCTGAGGATTATATGCTCTTTGACCCTTTCATATATCATGGCATGGCTGAAATGCATGACAGGCACAGAGAAATGCGCCTTGATGTTGACAATATGTCTTATGAGGAATTGTTGGCATTGGAGGAGCGTATAGGAGATGTGAGCACTGGATTGAGTGAGGACGTCATTATCAAGTTTATGAAACAGCGAATTTACATGCAGGTCATGACAGAGTCTTCTACTGATCTGGAACCTTGCTGTATCTGTCAGGAGGAATTTTCTGATGGAGAGAATGTTGGATCACTGGATTGTGGGCATGAGTTCCACAGTGGCTGCATCAAGCAGTGGCTAATGCAGAAGAACTTGTGCCCCATCTGCAAAACAACAGCGTTAGCTACATGATAGGGAGAACCTCTATCTTGTGTCAGTTTGATCTTTAGCTGGCTCTGTCTGTAACTTGTTTTATTTTATTATTTTATGAACTTCGTTCTCAAGAGAACAGGATCTCTCATATGTCATGATTGGGGATGATAACATACCCCTAAAAAAGAAGTAAACAGAAAACATTGGTGGGTGAACTGTTGTAGAGTTTCATTTATACTGTCGTAATGGACGATTACATGTCGTTTATGATAAAGCTATACTTAAGCACTTGAATATTATACAATTTCATTATAAATTTAAGGTTGGTGA 2640 0.4159 LLCAWYSVPLISFSLSLVSSFSPLVVFSLPLLFNNNNLINKEKKKTVIQRAEESSSSSSSAWDSLILMQGQRRTIGSFPAIVSMIPGPSSSGTDMNHQSSLNHVQNAVDFRLSDYRGSSGETACLRGNGHNVQGFSGWNTGESSSRLNLINQVNDDGLKSEHGLPSSCNATAEDGLRTVERQFEPNNVIFPVTSNTNQQGNQSRVHPSFLQGSSSNHINQNISLDMGHIANAADRGKGKEAGASVNDNNTSGLDREKTLFGSASCNHIGGSSESSGYMTWGDSASSSSSLVNWGPSCKRKALEGSSRQLCAGGSSSTLVQSENGFWPANPVDLNASSSLSDSIPLEDIPVTSPPLFHNTRNEVRQETSNAFPLISIAENMERPLRNFDRRMSQLQHQESVPLNLPSMGSARHHNHTSLHQVPGSHSINDSLELRLTAGVTTANSSAALNQSPTMRIHSFPWNRTANPRGARSSTSYNSGERAVLEDFNLRMFPRDSTEHPMNVPASSGHEPTGWHTPSGNVNNSGGVPPTPWIGSSSNVHPSPNPSWIFNREVPADNMQSVSEFSPWSLFPSISSASGVHNGHSTPSPSGPPSFTQGSSSNQSHLRTALLMERRGGDVLSGPHSLRALTFDNEGRRRLISEIRQVLMAMRRGESLRAEDYMLFDPFIYHGMAEMHDRHREMRLDVDNMSYEELLALEERIGDVSTGLSEDVIIKFMKQRIYMQVMTESSTDLEPCCICQEEFSDGENVGSLDCGHEFHSGCIKQWLMQKNLCPICKTTALAT 782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g04156 782 Pfam Ring finger domain 735 776 IPR001841 -
Pste3g04156 782 ProSiteProfiles Zinc finger RING-type profile. 735 776 IPR001841 -
Pste3g04156 782 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 293 780 IPR045191 GO:0061630
Pste3g04156 782 MobiDBLite consensus disorder prediction 577 603 - -
Pste3g04156 782 MobiDBLite consensus disorder prediction 495 541 - -
Pste3g04156 782 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 699 780 IPR013083 -
Pste3g04156 782 FunFam E3 ubiquitin-protein ligase MBR2 702 780 - -
Pste3g04156 782 SMART ring_2 735 775 IPR001841 -
Pste3g04156 782 SUPERFAMILY RING/U-box 719 779 - -
Pste3g04156 782 MobiDBLite consensus disorder prediction 509 541 - -
Pste3g04156 782 MobiDBLite consensus disorder prediction 458 477 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g04156 Pste-Chr3 38421533 38428106 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g04156 68 782 C3H Transcription Factor Family AT2G15530 37.820 7.85e-119 372