Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g04151 TATAAACCGCTCTACGAGGGCAATCTCGGGGAAACCCTAAATCCCCACGCCAAAATCTCCGATCACTCCCCAATCCATTTTCTCTGTTCTCTCTCTCTCTCTCTCTTTCTTTTTTATTTTCTCTCCCTTCCTTTTTTTCTCCTCGCGCGCCCTGACTCGCCACCGACTCGGTCCCCGGCCGGTTCGGTCCAAACCGTCATGGAGATCGCTCACGAGCCACCGCCTTCCCTCGACGGAAGCCCTATCCCCGCCGCCGCGAATTCTCCGAGGTCGTCGTCGTCCTCCCCTTCCTCCTCCTCCTCCTCTTCCGCCTCCTCGCCGCGCAGTTCCAAGGGAAAGGAGATCGAATCGACGGCGGCGCCGGCGGCAAAGTACGACGACGAGGAGGAGGAGGAAGAGGACGTGTGCCGAATTTGCCGGAACCCTGGCGACGCCGAGAATCCGCTCCGGTATCCGTGCGCGTGCAGCGGAAGCATCAAGTTTGTGCATCAGGATTGTCTCCTTCAGTGGCTTAATCACAGCAACGCGCGCCAATGCGAGGTCTGCAAGCATGCATTCTCCTTCTCTCCAGTTTATGCTGAGAATGCCCCAGCTAGGCTACCTTTTCAAGAGTTTGTGGTCGGAATGGCAATGAAAGCTTGCCATGTTCTTCAATTCTTTTTACGCCTGAGTTTTGTGCTATCTGTGTGGCTCTTAATTATTCCTTTCATAACATTCTGGATATGGCGATTAGCTTTTGTGAGAAGTTTAGGTGAAGCCCAGAGGTTATTCTTAAGCCATTTATCGACAGCAGTTATTCTGACTGATTGTCTCCATGGTTTCCTGCTTTCTGCAAGCATTGTCTTCATTTTTCTTGGGGCTACTTCTTTGAGAGATTACTTTAGGCATTTGCGAGAAATTGGGGGTCAGGATGCTGATAGAGAAGATGAAGTGGACAGAAATGGTGCTCGAATTGCTAGAAGACCTCCTGTACAAGCTAATCGTAATGTCAATGGTGATGGGAATGCTGAAGATGCTGGTGGAGCGCAAGGAATTGCAGGGGCAGGTCAAGTAATTAGAAGAAATGCTGAAAATGTTGCCGCACGGTGGGAGATGCAAGCAGCACGTCTTGAGGCTCATGTTGAGCAGATGTTCGATGGTCTGGATGATGCTGATGGAGCAGAAGATGTTCCCTTTGATGAACTTGTTGGCATGCAGGGTCCAGTTTTTCATTTGGTTGAAAATGCATTTACTGTTCTGGCAAGCAATATGATTTTCCTTGGTGTTGTAATCTTTGTGCCTTTCTCATTGGGCCGCATCATACTCCATTATCTGTCCTGGTTCTTCTCAAATGCTAGTGGTCCTGTGTTGTCAGTTGTGGCCCCACTTGCAGATACATCTCTCTCTCTAGCAAATATTACTTTGAAGAATGCATTAACAGCTGTTAAAAACTTGTCATCTGAAACTCAAGAAAGTGCATCAATTGGTGAGGTTGCAGATATGCTGAAAGCGAATGCTAGTGAATTGAGTGAAATGTCAAACAACATAACATCTGCTTCAGCTCTTATTTTGAAAGGAGGGTCAATTGGAACTTCAAGGCTTTCTGATGTGACTACTCTAGCTATTGGATATATTTTTATATTGACTCTAATTTTCTGCTACTTTGGGATTGTTGCTTTAATTCGATACACAAAGGGTGAGCCTTTGACTGTGGGAAGGTTTTATGGCATTGCTTCTATAGCAGAGACAATTCCATCTCTCTTCAGGCAGTTTTTGGCAGCAATGAGGCATTTGATGACCATGGTTAAGGTTGCTTTCCTTTTAGTCATTGAACTTGGGGTATTTCCTTTAATGTGTGGGTGGTGGCTCGATGTTTGTACCATTCAGATGTTTGGGAAGACAATGGTTCACAGAGTTCAGTTCTTCTCTGCATCCCCTTTAGCAAGCTCATTGGTTCATTGGGTTGTGGGGATTGTCTATATGCTACAAATTAGCATATTTGTCAGCCTTCTTAGAGGGGTTTTACGTAATGGAGTTTTATACTTCCTTCGAGACCCTGCTGATCCAAACTACAATCCATTCCGTGATCTGATAGATGATCCTGTGCACAAACATGCTCGCAGGGTTTTGTTATCTGTTGCAGTTTATGGGAGTCTGATTGTGATGCTGGTATTCTTGCCTGTCAAACTTGCCATGCGAATGGCACCTTCCATTTTCCCGCTTGACATATCGGTATCTGATCCATTCACCGAAATTCCAGCTGACATGCTTCTCTTTCAGATTTGTATCCCATTTGCTATTGAGCATTTTAAATTGAGGACAACTATTAAATCCCTACTACGCTATTGGTTTACTGCTGTTGGTTGGGCACTTGGTTTGACTGATTTCTTACTGCCTAGACCTGATGAAAGTGGTAATCAAGAAAATGGAAATGGGGAACCAGTTAGGCAGGAAAGACTACAAGTGGTACAAGCTGTGCATGATCAGGGTATAGTGCCATTTGCAGGTGATGATTTGAATACGGTGGGAGAACTGAATGCTGAAGATTATGATAATGATGAACAATCTGATTCCGACAGTTATGCCTTCGTGCTTCGCATTGTTCTTTTACTGGTGATTGCTTGGATGACTCTCCTTCTCTTCAACTCTGCTCTGATAGTTGTACCAATTTCACTTGGACGGGCACTTTTCAATTCTATTCCTCGCCTTCCCATAACTCATGGAATTAAATGCAATGATCTGTATGCATTTATCATTGGAAGCTATGTGATCTGGACTGCTGTTGCTGGAGTTAGATACTCAATTGAGCAAATAAGAAAAAGGAGATCTTCTGTGTTGTTCGGCCAAATATGGAAATGGTGTGGCATTCTTGTTAAAAGTTCTGCACTTCTGTCTATATGGATATTTGTGATTCCAGTGCTAATTGGGCTTCTCTTTGAGCTTTTGGTCATTGTGCCGATGAGAGTTCCTGTGGATGAGAGTCCAGTATTCCTCCTTTATCAGGACTGGGCTTTAGGCCTTATATTTCTCAAGATATGGACTAGATTGGTTATGTTGGACCACATGATGCCTCTGGTGGATGAGAGTTGGCGAGTAAAATTTGAGAGAGTAAGAGAGGATGGATTCTCCAGGCTGCAAGGCCTTTGGGTCCTTCGGGAGATTGTGCTTCCAATCATAATGAAACTGTTGACAGCGTTATGTGTACCTTACGTTTTGGCCAAAGGCGTGTTTCCAGTGCTTGGGTATCCCTTGGTGATCAATTCAGCTGTCTATCGGTTTGCATGGTTAGGATGCCTCTGCTTCAGTTTCTTGTGCTTCTGTGCCAAGAGATTCCATGTTTGGTTCACAAACCTCCACAATTCAATACGCGATGACCGGTATCTGATTGGCCGGAGATTGCATAACTATGGAGAACACGTTGAGAAAGCAAGTGAAGCAGGAACTTCTACAGGGGTGCAGGACACAATTTTACTAGATACAGGTTTGAACCAAGAAGATCGTGAAGGAGATGTTGGACTAAGGTTGAGGCGTGTAAATCAACAGGTTGGCTGAATTGAATCATATTTGAGGTAGGAAGGCCACTGTAGATTGTGATGCCTCGGGCTGACACGGTTCATGAAATCACTGATGATGTATACTCTAATACCTGTGTTTGGTAGTTATAACACCTCATCATGACACACCTGTGCTGTAGTTATAACATTAACATTTTGTGCGTATTCCTTGTTTAAATTTAGCTAATAGGAGGAAAATAAATTGTTGATAGCGCAATTTTTTTTTTTCAAAGAAATTCTGTGAAATAGGGAAGCGGAAAGAATGCAATGGTCTGGATCGTCTATCAGAGATATTCTACTTAGTTATGGATTCTTTTTTATTCACAAATGTTAGTTATTAATTTAATTTTAC 3885 0.4396 MEIAHEPPPSLDGSPIPAAANSPRSSSSSPSSSSSSSASSPRSSKGKEIESTAAPAAKYDDEEEEEEDVCRICRNPGDAENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFSPVYAENAPARLPFQEFVVGMAMKACHVLQFFLRLSFVLSVWLLIIPFITFWIWRLAFVRSLGEAQRLFLSHLSTAVILTDCLHGFLLSASIVFIFLGATSLRDYFRHLREIGGQDADREDEVDRNGARIARRPPVQANRNVNGDGNAEDAGGAQGIAGAGQVIRRNAENVAARWEMQAARLEAHVEQMFDGLDDADGAEDVPFDELVGMQGPVFHLVENAFTVLASNMIFLGVVIFVPFSLGRIILHYLSWFFSNASGPVLSVVAPLADTSLSLANITLKNALTAVKNLSSETQESASIGEVADMLKANASELSEMSNNITSASALILKGGSIGTSRLSDVTTLAIGYIFILTLIFCYFGIVALIRYTKGEPLTVGRFYGIASIAETIPSLFRQFLAAMRHLMTMVKVAFLLVIELGVFPLMCGWWLDVCTIQMFGKTMVHRVQFFSASPLASSLVHWVVGIVYMLQISIFVSLLRGVLRNGVLYFLRDPADPNYNPFRDLIDDPVHKHARRVLLSVAVYGSLIVMLVFLPVKLAMRMAPSIFPLDISVSDPFTEIPADMLLFQICIPFAIEHFKLRTTIKSLLRYWFTAVGWALGLTDFLLPRPDESGNQENGNGEPVRQERLQVVQAVHDQGIVPFAGDDLNTVGELNAEDYDNDEQSDSDSYAFVLRIVLLLVIAWMTLLLFNSALIVVPISLGRALFNSIPRLPITHGIKCNDLYAFIIGSYVIWTAVAGVRYSIEQIRKRRSSVLFGQIWKWCGILVKSSALLSIWIFVIPVLIGLLFELLVIVPMRVPVDESPVFLLYQDWALGLIFLKIWTRLVMLDHMMPLVDESWRVKFERVREDGFSRLQGLWVLREIVLPIIMKLLTALCVPYVLAKGVFPVLGYPLVINSAVYRFAWLGCLCFSFLCFCAKRFHVWFTNLHNSIRDDRYLIGRRLHNYGEHVEKASEAGTSTGVQDTILLDTGLNQEDREGDVGLRLRRVNQQVG 1110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g04151 1110 SMART ringv_2 69 117 IPR011016 GO:0008270
Pste3g04151 1110 CDD RING_CH-C4HC3_MARCH6 69 118 - -
Pste3g04151 1110 Coils Coil 287 307 - -
Pste3g04151 1110 MobiDBLite consensus disorder prediction 245 276 - -
Pste3g04151 1110 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 54 128 IPR013083 -
Pste3g04151 1110 ProSiteProfiles Zinc finger RING-type profile. 70 117 IPR001841 -
Pste3g04151 1110 SUPERFAMILY RING/U-box 64 120 - -
Pste3g04151 1110 FunFam Probable E3 ubiquitin ligase SUD1 55 128 - -
Pste3g04151 1110 PANTHER SSM4 PROTEIN 53 1066 - -
Pste3g04151 1110 Pfam RING-variant domain 70 116 IPR011016 GO:0008270
Pste3g04151 1110 MobiDBLite consensus disorder prediction 19 47 - -
Pste3g04151 1110 ProSiteProfiles Zinc finger RING-CH-type profile. 62 123 IPR011016 GO:0008270
Pste3g04151 1110 MobiDBLite consensus disorder prediction 1 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g04151 Pste-Chr3 37201328 37208305 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g04151 16 137 C3H Transcription Factor Family AT1G50440 28.358 8.49e-06 46.6