Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g04149 CGCCGCCGTGATTCCCGCCGGCGGCCACTCCTATCCGCCGCGCTTCCACATGTCCCCTTCCCTCTCCTCATGGCTCAGGTTCAGGTTCAGCCTCAGAATGCGATGCCCGGTCCCAACGGTGCTGCTGCTGCTGCCGCCGCCGCCGCCGCCGCTGCTGGTGGTGGAAACCAGTTCGTCACGACGTCGCTTTACGTCGGAGATCTCGACCCCAACGTCACGGACTCGCAGCTCTATGACTTGTTCAACCAATTGGGCCAAGTTGTGTCCGTTAGGGTTTGCAGGGATTTGACCACTCGAAGATCGCTTGGTTACGGCTATGTCAACTATAGCAATCCGCAAGATGCTGCCAGGGCACTGGATGTTCTGAACTTCACTCCTCTGAATAATAAGCCCATTCGTATTATGTATTCGCATCGTGATCCCAGTATCCGTAAAAGTGGGGCAGGAAATATATTTATTAAGAATTTGGATAGGGCAATTGACCACAAGGCATTGCATGATACCTTTTCTACATTTGGAAATATCCTTTCGTGCAAGGTAGCTACAGATTCATCTGGGCAATCAAAAGGCTATGGCTTTGTTCAATTTGATAATGAGGAATCTGCCCAAAAAGCCATTGAGAAGCTTAACGGCATGCTGTTGAATGATAAACAAGTGTATGTGGGACCCTTCCTTCGCAAGCAAGAGAGAGAAAGTGCTATTGACAAAGCAAAATTCAACAATGTTTTTGTGAAAAACCTATCAGAATCAACCACTGATGATGAATTGAAGAATGTTTTTGATGAATTTGGAACTATCACTAGTGCTGTAGTGATGAGGGACGGAGATGGAAAATCTAAGTGTTTTGGATTTGTTAATTTTGAGAATGCTGATGATGCTGCTAGGGCTGTTGAGGCTCTCAATGGCAAAAAGTTTGATGACAAGGAATGGTATGTTGGAAAAGCTCAAAAGAAATCTGAAAGGGAGCATGAATTGAAACAGCGGTTTGAGCAAAGCATGAAAGAAGCTGCTGATAAATATCAAGGGGCAAACTTGTATGTCAAAAATTTGGATGACAGCATTGGAGACGATAAACTTAAGGAGCTATTTTCTCCTTTTGGTACCATTACCTCTTGTAAGGTTATGAGAGATCCAAATGGCATAAGTCGTGGATCAGGATTTGTTGCATTCTCTACTCCTGAGGAGGCATCCAGAGCACTCTTGGAGATGAATGGCAAAATGGTGGTAAGCAAACCTCTGTATGTGACTCTTGCCCAACGGAAAGAAGATAGGAGAGCTAGACTGCAAGCTCAGTTTGCTCAAATGCGACCTGTTGGAATGCCACCATCTGTTGGTCCTCGTGTGCCAATGTATCCCCCAGGTGGTCCAGGTATGGGTCAACAAATATTTTATGGTCAAGGCCCTCCTGCTATCATTTCTTCCCAGGTAATCGTTTGTACTCTCTGTCTATACTTAGACTCCATTTTGCGCAATCTTCAATGGCATTTGATGTTGTTCCACTGA 1503 0.4558 RRRDSRRRPLLSAALPHVPFPLLMAQVQVQPQNAMPGPNGAAAAAAAAAAAAGGGNQFVTTSLYVGDLDPNVTDSQLYDLFNQLGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARALDVLNFTPLNNKPIRIMYSHRDPSIRKSGAGNIFIKNLDRAIDHKALHDTFSTFGNILSCKVATDSSGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGPFLRKQERESAIDKAKFNNVFVKNLSESTTDDELKNVFDEFGTITSAVVMRDGDGKSKCFGFVNFENADDAARAVEALNGKKFDDKEWYVGKAQKKSEREHELKQRFEQSMKEAADKYQGANLYVKNLDDSIGDDKLKELFSPFGTITSCKVMRDPNGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVTLAQRKEDRRARLQAQFAQMRPVGMPPSVGPRVPMYPPGGPGMGQQIFYGQGPPAIISSQVIVCTLCLYLDSILRNLQWHLMLFH 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g04149 500 FunFam Polyadenylate-binding protein 150 223 - -
Pste3g04149 500 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 151 219 IPR000504 GO:0003723
Pste3g04149 500 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 63 133 IPR000504 GO:0003723
Pste3g04149 500 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 242 310 IPR000504 GO:0003723
Pste3g04149 500 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 345 413 IPR000504 GO:0003723
Pste3g04149 500 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 62 476 IPR006515 GO:0003723
Pste3g04149 500 Gene3D - 55 149 IPR012677 -
Pste3g04149 500 FunFam Polyadenylate-binding protein 326 431 - -
Pste3g04149 500 PANTHER RNA BINDING PROTEIN 60 123 - -
Pste3g04149 500 Gene3D - 150 222 IPR012677 -
Pste3g04149 500 CDD RRM1_I_PABPs 62 141 IPR034364 -
Pste3g04149 500 SMART rrm2_1 62 135 IPR003954 GO:0003676
Pste3g04149 500 SMART rrm2_1 241 313 IPR003954 GO:0003676
Pste3g04149 500 SMART rrm2_1 344 416 IPR003954 GO:0003676
Pste3g04149 500 SMART rrm2_1 150 222 IPR003954 GO:0003676
Pste3g04149 500 SUPERFAMILY RNA-binding domain, RBD 61 230 IPR035979 GO:0003676
Pste3g04149 500 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 61 139 IPR000504 GO:0003723
Pste3g04149 500 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 240 317 IPR000504 GO:0003723
Pste3g04149 500 CDD RRM3_I_PABPs 239 318 - -
Pste3g04149 500 FunFam Polyadenylate-binding protein 46 149 - -
Pste3g04149 500 SMART rrm1_1 241 313 IPR000504 GO:0003723
Pste3g04149 500 SMART rrm1_1 344 416 IPR000504 GO:0003723
Pste3g04149 500 SMART rrm1_1 150 222 IPR000504 GO:0003723
Pste3g04149 500 SMART rrm1_1 62 135 IPR000504 GO:0003723
Pste3g04149 500 FunFam Polyadenylate-binding protein 230 325 - -
Pste3g04149 500 CDD RRM4_I_PABPs 342 420 - -
Pste3g04149 500 Gene3D - 325 429 IPR012677 -
Pste3g04149 500 Gene3D - 225 324 IPR012677 -
Pste3g04149 500 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 343 420 IPR000504 GO:0003723
Pste3g04149 500 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 149 221 IPR000504 GO:0003723
Pste3g04149 500 CDD RRM2_I_PABPs 147 223 IPR045305 -
Pste3g04149 500 SUPERFAMILY RNA-binding domain, RBD 240 423 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g04149 Pste-Chr3 37185468 37189871 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g04149 24 475 Eukaryotic Initiation Factors Gene Family AT4G34110 75.771 0.0 729